Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1124 ATGGAAGTTGCAAAGGTGACTGTGAAAGCTGTGGCTCTGATCGCCGGAGATAACAACGTGAGAGGAGCTCTTCAGTTTGTGCAACACCCCGATGGCCCTCATTTCAATCCATCCAAGAAAGACCATGGAGCTCGAACAGATGATGAGCGTCATGCGGGAGATTTGGGTAACATTGTTGCTGGCCCGGATGGGGTTGCTTATGTTTCAATCACAGACGGACAGATACCACTAAGTGGAGTTCATTCCATACTTGGGAGGGCAGTTGTTGTGCATGCTGACCCTGACGATCTTGGTAGAGACCCGGATGAACTGCTTATGAAACTTGCTGTTTTTGCATATCTTGTGATGAAACAGGTGGACATGGACTAA 369 0.4824 MEVAKVTVKAVALIAGDNNVRGALQFVQHPDGPHFNPSKKDHGARTDDERHAGDLGNIVAGPDGVAYVSITDGQIPLSGVHSILGRAVVVHADPDDLGRDPDELLMKLAVFAYLVMKQVDMD 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1124 122 Pfam Copper/zinc superoxide dismutase (SODC) 32 102 IPR001424 GO:0006801|GO:0046872
Lele16g1124 122 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 32 100 IPR024134 GO:0005507
Lele16g1124 122 MobiDBLite consensus disorder prediction 34 53 - -
Lele16g1124 122 Gene3D Superoxide dismutase, copper/zinc binding domain 31 109 IPR036423 GO:0006801|GO:0046872
Lele16g1124 122 SUPERFAMILY Cu,Zn superoxide dismutase-like 7 104 IPR036423 GO:0006801|GO:0046872
Lele16g1124 122 MobiDBLite consensus disorder prediction 30 53 - -
Lele16g1124 122 PRINTS Cu-Zn-superoxide dismutase family signature 15 37 IPR001424 GO:0006801|GO:0046872
Lele16g1124 122 PRINTS Cu-Zn-superoxide dismutase family signature 51 60 IPR001424 GO:0006801|GO:0046872
Lele16g1124 122 PRINTS Cu-Zn-superoxide dismutase family signature 70 92 IPR001424 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1124 Lele-ChrLele16 6332931 6334893 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1346 13 23387627 23391349 Lele16g1124 16 6332931 6334893 hybridization
Lele14g1253 14 21713813 21716611 Lele16g1124 16 6332931 6334893 hybridization