Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1123 ATGGAAATTCACTTTCAGCAACCAAAGAAGTTTCAGAAAGCTTCAGTTGTTCCAATCAGCAGAGGAGGAGGCAAGTTCAAAGGAAGGAACAAGAACAATGGTACAAACAAATTTGTCGGGGTAAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCTTGTCTTCTTCGAGGATCCAACACTCGCACCAACTTCATCACTCGTGTCCCCGATGATTCTCCTCTCGCTTCTCGTATTCGAAATCTGCTTAACAACAGAAGAGGAACCAAAGAACAAGATGCTGATGCTTCTTCTTCCTCAAGAGTCAACCCTAGTAGCTCTACCAGTACTAGTACTACTACTAGTAGGAGCTCAGACTCAAGCAATGGTGACAAAAATGATAGTGCTCTTTGTAGTGGGAAAATTCATAACACAGAGTTATTTGCTGATGGATATAGACCAGATTTGAGCAGTTGCAGGGAGGAATCTAATCTTTCATGGGGTCTTGGACATTTCATTGACCGTCTTCCTTTTGCTCAAGTATTGGAAGTGCCAAAGTCTGAAGATGGTGTTGCTGAGACAATTGAGTTAGAGTTTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCCATTAATGGAGTTCATGAGTACATGGAAACTGTTCAGGACTCTAATGAAGAAGCTTTTTGGGATCTTCCACCCTTATGGTCAATGTTCTGCTAA 807 0.4226 MEIHFQQPKKFQKASVVPISRGGGKFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVPDDSPLASRIRNLLNNRRGTKEQDADASSSSRVNPSSSTSTSTTTSRSSDSSNGDKNDSALCSGKIHNTELFADGYRPDLSSCREESNLSWGLGHFIDRLPFAQVLEVPKSEDGVAETIELEFSEFERMKVERQISASLYAINGVHEYMETVQDSNEEAFWDLPPLWSMFC 268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1123 268 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Lele16g1123 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 233 - -
Lele16g1123 268 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 MobiDBLite consensus disorder prediction 123 155 - -
Lele16g1123 268 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 MobiDBLite consensus disorder prediction 111 155 - -
Lele16g1123 268 Gene3D AP2/ERF domain 36 96 IPR036955 GO:0003700|GO:0006355
Lele16g1123 268 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Lele16g1123 268 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele16g1123 Lele-ChrLele16 6330017 6330823 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1123 25 268 AP2-EREBP Transcription Factor Family AT5G19790 43.023 1.12e-48 160
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g1123 AP2 5.8e-14 CL0081