LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1123	ATGGAAATTCACTTTCAGCAACCAAAGAAGTTTCAGAAAGCTTCAGTTGTTCCAATCAGCAGAGGAGGAGGCAAGTTCAAAGGAAGGAACAAGAACAATGGTACAAACAAATTTGTCGGGGTAAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCTTGTCTTCTTCGAGGATCCAACACTCGCACCAACTTCATCACTCGTGTCCCCGATGATTCTCCTCTCGCTTCTCGTATTCGAAATCTGCTTAACAACAGAAGAGGAACCAAAGAACAAGATGCTGATGCTTCTTCTTCCTCAAGAGTCAACCCTAGTAGCTCTACCAGTACTAGTACTACTACTAGTAGGAGCTCAGACTCAAGCAATGGTGACAAAAATGATAGTGCTCTTTGTAGTGGGAAAATTCATAACACAGAGTTATTTGCTGATGGATATAGACCAGATTTGAGCAGTTGCAGGGAGGAATCTAATCTTTCATGGGGTCTTGGACATTTCATTGACCGTCTTCCTTTTGCTCAAGTATTGGAAGTGCCAAAGTCTGAAGATGGTGTTGCTGAGACAATTGAGTTAGAGTTTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCCATTAATGGAGTTCATGAGTACATGGAAACTGTTCAGGACTCTAATGAAGAAGCTTTTTGGGATCTTCCACCCTTATGGTCAATGTTCTGCTAA	807	0.4226	MEIHFQQPKKFQKASVVPISRGGGKFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVPDDSPLASRIRNLLNNRRGTKEQDADASSSSRVNPSSSTSTSTTTSRSSDSSNGDKNDSALCSGKIHNTELFADGYRPDLSSCREESNLSWGLGHFIDRLPFAQVLEVPKSEDGVAETIELEFSEFERMKVERQISASLYAINGVHEYMETVQDSNEEAFWDLPPLWSMFC	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1123	268	Pfam	AP2 domain	37	86	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	FunFam	ethylene-responsive transcription factor RAP2-11	36	95	-	-
	Lele16g1123	268	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	31	233	-	-
	Lele16g1123	268	SMART	rav1_2	37	100	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	MobiDBLite	consensus disorder prediction	123	155	-	-
	Lele16g1123	268	CDD	AP2	37	93	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	ProSiteProfiles	AP2/ERF domain profile.	37	94	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	MobiDBLite	consensus disorder prediction	111	155	-	-
	Lele16g1123	268	Gene3D	AP2/ERF domain	36	96	IPR036955	GO:0003700\|GO:0006355
	Lele16g1123	268	PRINTS	Ethylene responsive element binding protein signature	38	49	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	PRINTS	Ethylene responsive element binding protein signature	60	76	IPR001471	GO:0003700\|GO:0006355
	Lele16g1123	268	SUPERFAMILY	DNA-binding domain	37	94	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1123	Lele-ChrLele16	6330017	6330823	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1123	25	268	AP2-EREBP Transcription Factor Family	AT5G19790	43.023	1.12e-48	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele16g1123		AP2	5.8e-14	CL0081