Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1121 ATGGGGGGATCGGTGAAATATTTAGAGAAAGTGGTGAGAGACGAGAAGGAGACGGTGGCGTTGCTGAACAGTGTGGGAGAAAATGGATATGATTTGTACATAGCAGGGAGAGGGCAAGGGAGGAGAATGTCGTTGGTTTCCAGTACCAAGGATTACAGTTTAGTCAAATGCATTAATTTTACTATCTCTACACAGGAATCGTTTGAAATCCCACGTGGTCCTGGAAATGGGGACGTGGAGTTAGGCTCATATTTACGGACTTCAGGAGAACTGGGTTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAGTTTGAGAGGCTGGGTAAGCTTCTCAGACAGCTCCAGGATGCTCACGAGGAGTCCAAAGCAGTGACCAAAGCTCCTGCCATGAAGGATATTAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAATTGCCCATCACATAAAAACAAGAATTGAAGAATTGGACAGAGAAAACTTGGAAAATAGGCAAAAGCGTGGGTGTGGAAAAGGATCAGGTATCGACAGGTCAAGAACAGCAACCACCATTGCCGTAAAAAAGAAATTGAAGGACAAGATGGATGAGTTTCAGAGGCTGAGGGAAGTCATACATCAAGAATATCGCGAGGTTGTAGAGAGGCGTGTTTATACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAGATTTTCCAGAATGCAATTAAGGAACATGGAAGAGGCCGGATAGTGGACACTCTAGCAGAAATTCAGGAACGGCACGAAGCAGCCAGAGACGTCGAGAGGAAGCTTCTTGATTTGCAGCAGATATATATGGATTTGGCAGTGTTGGTTGATTCACAGGGAGACATTCTTAACAACATAGAATCCCAGGTATCAAGTGCGGTAGATCATGTACAGCAAGGCAATAATGCACTGGTGAAGGCAAAGAAGGCACAGAAGAGTTCGAGAAAATGGATGTGCATTGCTATTATAATACTTCTTCTTGTTGTCGTCGTCGTTCTTACTTCTGTCCTCAGACCATGGAGTGACAGAAGAGGGGCCTAG 1095 0.4393 MGGSVKYLEKVVRDEKETVALLNSVGENGYDLYIAGRGQGRRMSLVSSTKDYSLVKCINFTISTQESFEIPRGPGNGDVELGSYLRTSGELGLDTFFKKVQELDKQFERLGKLLRQLQDAHEESKAVTKAPAMKDIKQRMEKDVDEVKKIAHHIKTRIEELDRENLENRQKRGCGKGSGIDRSRTATTIAVKKKLKDKMDEFQRLREVIHQEYREVVERRVYTVTGTRADEETIDRLIETGDSEQIFQNAIKEHGRGRIVDTLAEIQERHEAARDVERKLLDLQQIYMDLAVLVDSQGDILNNIESQVSSAVDHVQQGNNALVKAKKAQKSSRKWMCIAIIILLLVVVVVLTSVLRPWSDRRGA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1121 364 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 263 325 IPR000727 -
Lele16g1121 364 SMART tSNARE_6 258 325 IPR000727 -
Lele16g1121 364 Gene3D - 91 217 - -
Lele16g1121 364 SUPERFAMILY t-snare proteins 92 318 IPR010989 GO:0016020|GO:0016192
Lele16g1121 364 Gene3D - 260 355 - -
Lele16g1121 364 FunFam Syntaxin 132 256 356 - -
Lele16g1121 364 Pfam SNARE domain 300 351 IPR000727 -
Lele16g1121 364 Coils Coil 100 123 - -
Lele16g1121 364 CDD SNARE_syntaxin1-like 262 324 - -
Lele16g1121 364 CDD SynN 93 250 IPR006011 GO:0016020
Lele16g1121 364 Coils Coil 192 212 - -
Lele16g1121 364 Coils Coil 144 164 - -
Lele16g1121 364 Pfam Syntaxin 96 298 IPR006011 GO:0016020
Lele16g1121 364 SMART SynN_4 88 214 IPR006011 GO:0016020
Lele16g1121 364 FunFam Syntaxin 132 88 217 - -
Lele16g1121 364 PANTHER SYNTAXIN 96 343 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1121 Lele-ChrLele16 6313359 6319395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1121 67 364 SNARE and Associated Proteins AT3G03800 69.900 1.74e-145 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1349 13 23403541 23410564 Lele16g1121 16 6313359 6319395 hybridization
Lele14g1256 14 21730140 21735397 Lele16g1121 16 6313359 6319395 hybridization