Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1093 ATGGCCGAACGTGGCGGCTTTGGCCGTGGCTTCGGTGGTCGTGGAGGACGTGGTGACCGGGGTCGTGGAGGACGCCGCAGGGGTGCTCGACGGGAAGAGGAGGAAAAGTGGGTTCCCGTGACCAAGCTCGGCCGTCTTGTCAAAGAGGGAAAGATTCATAGCCTCGAGCAGATCTACCTCCACTCTCTTCCGATCAAGGAGTACCAGATCATGGATACATTGGTTGGTCCCAGCCTGAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAGCAGACGCGAGCCGGTCAGAGGACCCGGTTCAAGGCGTTCGTTGTTGTCGGCGACGGCAATGGACACGTGGGACTTGGCGTGAAGTGCAGCAAGGAGGTCGCTACGGCCATTCGCGGCGCAATTATTTTGGCTAAGCTATCGGTCATTCCGGTGAGAAGAGGCTACTGGGGTAACAAGATCGGTAAGCCTCATACAGTTCCGTGCAAGGTTACTGGAAAGTGTGGCTCAGTTACAGTGCGGATGAATCGTTGCTGCTAG 531 0.5706 MAERGGFGRGFGGRGGRGDRGRGGRRRGARREEEEKWVPVTKLGRLVKEGKIHSLEQIYLHSLPIKEYQIMDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMNRCC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1093 176 ProSitePatterns Ribosomal protein S5 signature. 96 128 IPR018192 -
Lele16g1093 176 Gene3D - 142 175 IPR014721 -
Lele16g1093 176 MobiDBLite consensus disorder prediction 1 34 - -
Lele16g1093 176 SUPERFAMILY dsRNA-binding domain-like 75 144 - -
Lele16g1093 176 ProSiteProfiles S5 double stranded RNA-binding domain profile. 79 142 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele16g1093 176 TIGRFAM uS5_euk_arch: ribosomal protein uS5 32 172 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lele16g1093 176 Gene3D - 36 141 - -
Lele16g1093 176 FunFam 40S ribosomal protein S2 36 141 - -
Lele16g1093 176 Pfam Ribosomal protein S5, N-terminal domain 79 143 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele16g1093 176 PANTHER RIBOSOMAL S SUBUNIT 24 172 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1093 Lele-ChrLele16 6163737 6164267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1093 33 172 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.857 1.87e-93 271