Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1089 ATGAGCGGTCCTGCAGAAATGTCTCACAAGGATCCGGCTATCAAGCTATTTGGCAGGAAGATTCCCTTGCCGGAATGTCAGAATCCGGGGACCTCTCCATTGCCTCCTCAGATTCCGGCCAACTCCAAAACCATGGATGCTTGCAGTAGCTTGAAGGAAACAGAAGTGGAAAGAGTTTGTGCAGAGAACTCTGAGCAACAAGAGAATGCCTCTGATTTAGCAGCAAGTAAAGAAGGGTCACAACATAATCAGCTGGAAAATGAGCCCAAAGCCAATCCCAAGACCATGGAAGATAGAGGGGAAACTAGTAGCACGGATCAAGATAAATCATTCAAGAAACCAGATAAGATTCTTCAGTGTCCGCGATGCAACAGTTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAACCAGCCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGGAATGTTCCGGTGGGTGCTGGGAGACGAAAGAATAAGCACCTAGCCTCTCAGTTTCGCCCCATCATAGTGTCCTCTGATGGAATTTCAACCTCTAGGTTGGAAACCACAGACTCATCTAATCACCAACTCATCTCATCTCCTGAATCTTCAGCTGCTTTCAGGTCTTCAATGGCAATGGATAATGGTATTGTGTTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAGACAATGCTTACTATTAGAGACCAGAAAAGGAAAGTTGATGCAGAAAATGGGAAAGAACCATCTTTATGTGGATCTTCAGTACCAAATAGTAGTGCTACAGAACTTGTCATGCAAAAGGAGCAGTGTGTTTCTAATCAGCTTAGCACATCAAATCAAATGCAATGTTACCCTGTTCCTCCACTGTTGTTTCCCTGGAATCCAGATTGGAACAATGTTGTTTCTATGGCCGCAATTCATCAATCTTCAGCGCCAATGCAGTGGTATCCTACGCCAATGGTGGCAGTTCCCGGCATGTGCCCACCCGGCGTTCCTTTACAATATGCACCACCATTATATTGGTCTGCCGGCTCCGGGACAGTCTCAATAGGGTCTAACGGTTGCCTTTCGCCGTTATCGTCAACAAGTAATAGCTGCTGCTCAGGCAATGGCTCTCCAGCATTGGGAAAACACTCTAGAGATACAGTTTTCGTAGATGAAGAGAAATCAGAGAAGTGTGTTCTGGTTCCAAAGACTCTTAGGATTGACGATCCAAATGAAGCTTCAAAAAGTCCTATATGGGCTACATTAGGTATAAAGCCTGACAAGAAGGAGTCTGAATCATCAGAAGGTCGTAGTTCAAAGAAATTGGAGGCTGAAGGAGATGGAAAAGATCGTGTGTTGGGTGTTTCTCAAATTTTGGAAGCTAACCCAGCTGCTATCTCTAGGGCACATGCATTCCAGGAGACTATATAA 1446 0.4488 MSGPAEMSHKDPAIKLFGRKIPLPECQNPGTSPLPPQIPANSKTMDACSSLKETEVERVCAENSEQQENASDLAASKEGSQHNQLENEPKANPKTMEDRGETSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRPIIVSSDGISTSRLETTDSSNHQLISSPESSAAFRSSMAMDNGIVLKFGPDAPPLCESMETMLTIRDQKRKVDAENGKEPSLCGSSVPNSSATELVMQKEQCVSNQLSTSNQMQCYPVPPLLFPWNPDWNNVVSMAAIHQSSAPMQWYPTPMVAVPGMCPPGVPLQYAPPLYWSAGSGTVSIGSNGCLSPLSSTSNSCCSGNGSPALGKHSRDTVFVDEEKSEKCVLVPKTLRIDDPNEASKSPIWATLGIKPDKKESESSEGRSSKKLEAEGDGKDRVLGVSQILEANPAAISRAHAFQETI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1089 481 MobiDBLite consensus disorder prediction 1 113 - -
Lele16g1089 481 MobiDBLite consensus disorder prediction 430 454 - -
Lele16g1089 481 MobiDBLite consensus disorder prediction 63 90 - -
Lele16g1089 481 MobiDBLite consensus disorder prediction 91 113 - -
Lele16g1089 481 PANTHER CYCLIC DOF FACTOR 2 9 480 IPR045174 GO:0003700|GO:0006355
Lele16g1089 481 MobiDBLite consensus disorder prediction 423 454 - -
Lele16g1089 481 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Lele16g1089 481 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Lele16g1089 481 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1089 Lele-ChrLele16 6146310 6148735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1089 11 480 C2C2-Dof Transcription Factor Family AT5G39660 36.015 3.60e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele16g1089 zf-Dof 2.7e-32 No_clan