Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1079 ATGGGAAGACCTCCTTGCTGTGACAAAGTTGGGATCAAGAAGGGACCATGGACACCTGAGGAGGATATCATCCTTGTTTCCTACATCCAAGAGCATGGCCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACTAACTACCTCAGGCCAGGAATCAAGAGGGGCAACTTCACACCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTTCTGGGAAACAAATGGGCAGCCATAGCTTCGTACCTACCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACGCATCTAAAGAAGAAGCTGAAGAAATTTCAAGCCGCCTTGGACCCCCACCTTGTGTCACCGGACTCAACTACGTCTGCTCAGCTTGCATCTAAGAGCTTTCATGACAGAACAAGTTTAGATATGAGCAGCACTTCATCATCTCTTAGGCTTAGTCATCAGTCTCAGACGTCACAGTCACAGTCTCAGTCTCAGTCCTCGTCCTCCACCTATGCCTCAAGCACTGAGAACATCTCACGCCTCTTACAAGGTTGGATGAGATCATCCCCAAAACCAGACACTAGTAGTCTTCTCCAAGTAACCAAAGACAAAGACCTTCAAAACAACAACAACGTTAACAGCTTCGAAAACAGCAATAAGCCGATGATGGTGAAGTCTGAATCAGTACCTGCTGCTTTAAATTTTGTGTCGTCGTCCTATCATCATCATCAAGCAAAAGATGAGCAGGAGGGTGGAGATATGGTGTCCCATGAAGAGTTCGATTCCATTCTGTCGTTCGAGAACCTAAACAATGCTGCTTGGGACAATTCCACTTGTGATTCTGAGAAGGTTCATCATGATAAGCAGAGATCAGATGGCAATAATGCTCCACCATTATCGTTTCTTGAGAAGTGGCTGTTTGAAGAAAATGTGGGCCATGAGGAGATGATGGAACTATCACCTATGTTCTAA 999 0.4484 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALDPHLVSPDSTTSAQLASKSFHDRTSLDMSSTSSSLRLSHQSQTSQSQSQSQSSSSTYASSTENISRLLQGWMRSSPKPDTSSLLQVTKDKDLQNNNNVNSFENSNKPMMVKSESVPAALNFVSSSYHHHQAKDEQEGGDMVSHEEFDSILSFENLNNAAWDNSTCDSEKVHHDKQRSDGNNAPPLSFLEKWLFEENVGHEEMMELSPMF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1079 332 MobiDBLite consensus disorder prediction 141 182 - -
Lele16g1079 332 Gene3D - 68 141 - -
Lele16g1079 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele16g1079 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Lele16g1079 332 MobiDBLite consensus disorder prediction 195 230 - -
Lele16g1079 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele16g1079 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele16g1079 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele16g1079 332 FunFam MYB-related transcription factor 13 66 - -
Lele16g1079 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele16g1079 332 FunFam Transcription factor MYB60 68 139 - -
Lele16g1079 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele16g1079 332 SMART sant 66 114 IPR001005 -
Lele16g1079 332 SMART sant 13 63 IPR001005 -
Lele16g1079 332 Gene3D - 13 66 - -
Lele16g1079 332 CDD SANT 16 61 IPR001005 -
Lele16g1079 332 CDD SANT 69 112 IPR001005 -
Lele16g1079 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1079 Lele-ChrLele16 6091789 6093134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1079 1 205 MYB Transcription Factor Family AT5G62470 53.906 1.31e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g1079 Myb_DNA-binding 1.7e-15 CL0123