Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1078 ATGGCGAGCAGAAAGGAAGATGAGAGAAACGAGAAGATTATCAGAGGTCTTATGAAACTTCCGCCTAATCGAAGATGTATCAACTGCAATAGTCTGGGTCCGCAATATGTCTGTACGACTTTTTGGACCTTCGTTTGCATGACATGCAGTGGGATACATCGTGAGTTTACTCATCGAGTTAAGTCTGTATCAATGGCAAAATTCACTTCTCAAGAAGTAGAAGCTCTTCAAAATGGTGGCAACCAGCGTGCAAGGGACATATATTTGAAAGATTGGGATTTCCAAAGGCAGCGTATGCCAGATAGCAGCAATGTTGACAAAATAAGGGAGTTTATAAGGAATGTGTACATTGACCGAAGATATGCTGGAGCAAGGTCCTCTGACAAGCCTCCAAGAGATACGCAGAGCCCCAGAATCCAAGGAGATGACACAAGGCGGGCTAGCTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAAGATCGGCGGTATGGAAGACAAGCAGCTGCATTGACCAGGAAGCCTGGATCAGATAAAGGAGGTCGCTATGAAGGGAAGATGTCTAGTATTATGTATAGTCCTGGGCGCTTCAGTGACCATGCATCTGAGGATGGCTTTGCTAATGAGGGATCTGGTACAAGAATTTCCGACTATTCTGTGTCTAGTGCTGGTGCTGTGCAATCTCCTAAGTTTCATAGGGACATGCGAAGTAGTCCGTTCCATCAGCGTTCTAGTGCTGGGTCAAGTGAAGATGTATGGTCTCCATCATGGTATACGTCTCTGGAAACAATTGTCAAGGGTGATTCAGATGGACATCATCCACAGAGAACCACACCACGGGGATCAACTGACTGCAATCCATCATCCCATAGTTCTTTCAGTTCTGGTGGTTTAGATTTATTTGCAGAGCCTGTCCAAGCTTTTGGATCCAATCTGGATAAGGTGTCTGCCATACCAGTAGCACAACAATCATGTCCAGCAAGATCAGTCGGCTTGGATCTTTCAAAGGCAGCTGTGGCATCTCAGCCATTGTCCTCCTTAATGCCACCTATTGATCTTTTTGAGTTTCCATCATCATCTCAGGCTCCGTCAGTGGATTTGTTTGAACCATCTATTTTGTCTTCAGCTCCGTCTTCTAATGAAAATCAACCGTCACAAACATCACAGTTCTCATCTATTGGCTTCTTTGCGGATGTTTCTAAGAATCAACCTTCTGCTCCATCAGATGAGAAGTCACCAGAGTTCTTTGTTCCTAAAAATGAAGGTTGGGCAACATTTGATATCCCTCAGCACACAGCATCTCCTGCACAAGTTGAAATTCCAGCAGGAGTTCCTTCAACTGTCAAGTCTTTGCTGGAGTTATTTGATCCATTTTCAACTGCAAATGCCAACAAGCAGTGGCCATCTTTTGACACTTCTGGTGTTCATGAACCTTCAACCACCTCTAATGCATGGCATGGTGGGGTGCAGAATGGAGAACAAGCTTCCATAACTGTTGCAAATGCTCAACCATGGAATGCATTTGAAGATTCTGGTTCCCACCTTCCTGTAGATGCTGTTAATCAAGGGTTGCAGCTGCATAATCTTCCATCAAGTGATGATCAATTTTTAAGCTCAAAAGTCTCTGAGGGTTCCAAAGGCGGGGTGCAAGACTTTGCCCCTATTTGTGCATTCGATGACAATATTCAATCAGATGTTAGTGGTTTACCTTATGCTCCAACTGTGATTCCTCTGATGGAAGAGTCTCAACTCAGTGCAACCAACCAGAAATCAACTAATCCATTTGATATTCCCTTTGAATCTGATGTAGAGCACAACAATATGTTCCTTGATCTGAGCTCATTGCAAGCTGCTCTGCCAGATTCCCAGCTGGCTCCTCCATACCATGGAGGTAATAGTGTAGCTGAACCATGGCTCCAGCAAAGTGTGACCCCATATATTTCTTCTGCAGGAGAAGGAGGTCTTACATTCATGGCTGCGCAACCACCAAGCTCTCAAATACCGAACATCCAGACGCAAGGGCCAGTTGCATCTTTTGGGGGCAATCCTTTTGCATAG 2070 0.4444 MASRKEDERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVEALQNGGNQRARDIYLKDWDFQRQRMPDSSNVDKIREFIRNVYIDRRYAGARSSDKPPRDTQSPRIQGDDTRRASSYHSYSQSPPYDYQYEDRRYGRQAAALTRKPGSDKGGRYEGKMSSIMYSPGRFSDHASEDGFANEGSGTRISDYSVSSAGAVQSPKFHRDMRSSPFHQRSSAGSSEDVWSPSWYTSLETIVKGDSDGHHPQRTTPRGSTDCNPSSHSSFSSGGLDLFAEPVQAFGSNLDKVSAIPVAQQSCPARSVGLDLSKAAVASQPLSSLMPPIDLFEFPSSSQAPSVDLFEPSILSSAPSSNENQPSQTSQFSSIGFFADVSKNQPSAPSDEKSPEFFVPKNEGWATFDIPQHTASPAQVEIPAGVPSTVKSLLELFDPFSTANANKQWPSFDTSGVHEPSTTSNAWHGGVQNGEQASITVANAQPWNAFEDSGSHLPVDAVNQGLQLHNLPSSDDQFLSSKVSEGSKGGVQDFAPICAFDDNIQSDVSGLPYAPTVIPLMEESQLSATNQKSTNPFDIPFESDVEHNNMFLDLSSLQAALPDSQLAPPYHGGNSVAEPWLQQSVTPYISSAGEGGLTFMAAQPPSSQIPNIQTQGPVASFGGNPFA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1078 689 MobiDBLite consensus disorder prediction 233 257 - -
Lele16g1078 689 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Lele16g1078 689 PANTHER ARFGAP/RECO-RELATED 1 689 IPR044820 GO:0005096
Lele16g1078 689 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Lele16g1078 689 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Lele16g1078 689 MobiDBLite consensus disorder prediction 282 297 - -
Lele16g1078 689 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lele16g1078 689 MobiDBLite consensus disorder prediction 122 140 - -
Lele16g1078 689 MobiDBLite consensus disorder prediction 122 163 - -
Lele16g1078 689 MobiDBLite consensus disorder prediction 269 297 - -
Lele16g1078 689 MobiDBLite consensus disorder prediction 141 159 - -
Lele16g1078 689 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Lele16g1078 689 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lele16g1078 689 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lele16g1078 689 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lele16g1078 689 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Lele16g1078 689 CDD ArfGap_AGFG 11 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1078 Lele-ChrLele16 6085039 6090402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1078 14 116 C2H2 Transcription Factor Family AT4G05330 31.579 2.41e-10 60.8