Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1071 ATGGGGAGGAAGCGAAAGCTAACGCCAAAACCTGCCGAATCTGCTGAACCCCCATTGAAGCAACAGCATCAACAACAGGAGGAGCAGCAATATGATCCAGAAGAGGACCAAACTGTTGAAGAACAAGATAATGGAGCCGATTACGAAGAAATTGAAGTGGAGGAGGAGGAGGAGGAGGTAGAAGAAGAGGACGAGGAGGAACAAGAACCAGGAGAAGGATCCACAGACGATAACTCAAATCCCGATCACGCTCAAGATGCGAATGATCAGGCATCTAAGGCCCAAACGACATCAGCGGCTGGAACATCAGTAACCGGTCAATCTGGAAAGGACGACGACGACGAAGAGCCGATACTTAAGCTTCTGGAACCGTTCAGCAAGGAACAAATTTTAAATCTGCTGTGCGAAGCGGCGAATAACCATCGCGATGTAGCGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGCTCATCGAAAAATATTCGTGCACGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGATATTGAAGATTGCAAGGCGGTATGTGACAAGGTATCCGGTAAGTCCAAGGGCTATGGCTTCATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCCCTGAGGCAACCGCAGAAAAAGATCGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGGTTGGCCCGGTTCAACAGCCAGTCGCTGCACAATCAACCTCAGCACAACAAGTATCAGAGTATACCCAAAGGAAGATTTACGTCAGTAATGTTGGGGCCGATTTGGATCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTTGTGTACAAGAGCGTTGAGAGTGCCATAAAGGCGCTGGAAGAGCCCCACAAGGAATATGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGATGGTCCGAAACCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGTCCACAACATATGTGGGTGGGGCTGCTACCGGACAAGGGCACCTGATGGCGCCAGCTGGACCTGGTATTGGATTTAACCCACAGGCGGCTGCTGCACAGACCCTAAACCCAGCTCTTGGGCAGGCACTGACAGCACTGCTTGCAACCCAAGGGGCTGGCTTGGGGCTGACCAATTTATTGGGAACTCTGGGATCAGCTGGTACGGTAAACCCAGCTGTTCCTTCTGCCGGCCATGGAATGCAGGGTGGTTACAGTAACCAACCAAATATAAGCTCGGGTGTTATTGGTGGATATGGAAATCAAAGTGGCTTACAGGGGACATATCCAAACCAGCAGGTTGGACAAAGTGGTTCTGGCAGAGGGCAGCATGGTGTCGGCCAATATGGTGGTGTTGCACCTTACATGGGACACTAG 1494 0.5087 MGRKRKLTPKPAESAEPPLKQQHQQQEEQQYDPEEDQTVEEQDNGADYEEIEVEEEEEEVEEEDEEEQEPGEGSTDDNSNPDHAQDANDQASKAQTTSAAGTSVTGQSGKDDDDEEPILKLLEPFSKEQILNLLCEAANNHRDVADRVRKVADEDPAHRKIFVHGLGWDTNADTLINVFKQYGDIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALRQPQKKIGNRMTACQLASVGPVQQPVAAQSTSAQQVSEYTQRKIYVSNVGADLDPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESAIKALEEPHKEYEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNESTTYVGGAATGQGHLMAPAGPGIGFNPQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSAGTVNPAVPSAGHGMQGGYSNQPNISSGVIGGYGNQSGLQGTYPNQQVGQSGSGRGQHGVGQYGGVAPYMGH 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1071 497 Gene3D - 243 373 IPR012677 -
Lele16g1071 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 335 IPR000504 GO:0003723
Lele16g1071 497 Gene3D - 136 242 IPR012677 -
Lele16g1071 497 MobiDBLite consensus disorder prediction 336 358 - -
Lele16g1071 497 SUPERFAMILY RNA-binding domain, RBD 151 241 IPR035979 GO:0003676
Lele16g1071 497 MobiDBLite consensus disorder prediction 31 73 - -
Lele16g1071 497 Coils Coil 46 68 - -
Lele16g1071 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 328 IPR000504 GO:0003723
Lele16g1071 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 227 IPR000504 GO:0003723
Lele16g1071 497 CDD RRM_RBM24_RBM38_like 159 234 - -
Lele16g1071 497 MobiDBLite consensus disorder prediction 1 115 - -
Lele16g1071 497 SMART rrm1_1 160 232 IPR000504 GO:0003723
Lele16g1071 497 SMART rrm1_1 260 332 IPR000504 GO:0003723
Lele16g1071 497 CDD RRM_RBM24_RBM38_like 259 334 - -
Lele16g1071 497 SUPERFAMILY RNA-binding domain, RBD 242 357 IPR035979 GO:0003676
Lele16g1071 497 MobiDBLite consensus disorder prediction 465 497 - -
Lele16g1071 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 236 IPR000504 GO:0003723
Lele16g1071 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 29 344 - -
Lele16g1071 497 MobiDBLite consensus disorder prediction 465 482 - -
Lele16g1071 497 MobiDBLite consensus disorder prediction 74 107 - -
Lele16g1071 497 MobiDBLite consensus disorder prediction 343 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1071 Lele-ChrLele16 6041595 6043088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1071 258 376 C2H2 Transcription Factor Family AT2G19380 32.787 8.40e-11 62.4