LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1057	ATGGAGAACAGTTTGGGTCAAGACTCTAATCCAGCACATGGGTCCTTTGATAAGTCTAGGGTTTTGAATGTTAAGCCATTGCGAACTCTTGTTCCTATATTCCCTTCACCATCTAATGCCTCTTCGTCTTCAAATTCACAAGGCGGGGCACCCTTTGTTTCAGTCTCTCCGTCTGGCCCCTTCCCCCCTGGCATTTCCTCCTTCTACCCGTTCTTCTTCTCTCCAGAGTCTCAGAGATTCCCTGAACAAAATCTTCAAACCCCAGCAGCTGGTGTGCCTGCAGTTCCACTTAATTCATTTAGGACACCAACCCCAAGAGCTAAGGCTACTACTAATGGAGTTGCAGGGTCATCTAGAAGAAGCAAAAAGGGTTTCGCGAATGGCGATGACTATAGTAATAGCTATCAAATCAATTTTGAGGTCAATGAAACTGATGCAGAAGACGGAAGCCAGGATAGAAGGCTTATATCGAAGAAGAAAAAAGGAAGGCAGGGAGGCGACTCTGCAGCAGTGGAGGTTGATTTGGATAAAGTATCTAATGATATTCTCAAGTCAATTAATCCAATTGTTTTTGATGTCTTGAATCAACCAGACGGTAACAAAGATGCAGTTTCATATACACTTATGATATTTGAAGTGTTAAGAAGGAAGATCACTCAAATTGAAGATCTGAAAGACGGAAATCCTGGAGTGGCAAGACGGCCTGATTTGAGGGCAGGCACAATTATGTTGACTAAAGGGGTGCGGACAAATAGTAAGAAACGTATTGGAGCTGTTCCTGGTGTTGAAATTGGGGATATTTTCTTTTTTAGGATGGAATTGTGTGCGGTGGGGTTGCATGCACCATCTATGGCTGGAATTGATTACATGAGTGTCAAATTCAGTCAAGAAGAAGAGCCATTAGCTGTAAGTATTGTCTCGTCTGGAGGATATGAAGATAATACAGAGGATGGGGATGTTCTGATTTACAGTGGCCAAGGTGGGGCTAATGGGAGTGATCAAAAGCTTGAAAGAGGTAATCTTGCATTGGAAAAGAGTCTGCATCGTGGTAACGAAGTTAGAGTAATTAGAGGTCTCAAGGACAGTACTAACCCTATGGGGAGGATATATGTTTATGACGGCCTTTACAAGATCCAACACTCATGGGTAGAAAAAGGAAGATCAGGTTTCAGTGTATTTAAGTATAAATTAGTCAGGCTGCCTGGGCAGGCTGAAGCATACATGACATGGAAATCCATTCGGCAGTGGACCGAGAAGTCTACTTCAAGAGTTGGGGTTATATTGCCGGATCTTACTTCTGGGGCTGAAAAGGTTCCTGTTTGTCTTGTGAATGATGTTGATAGTGAGAAGGGCCCTGCATATTTCACCTACTGCCCTTCTCTTAGGAATCTGAAGCCGGCAAATCCCATAGATCAATCTGCTGGATGTGAAGTCATAGATAATGCTCGAGTGGAGGAGCTTGGTGTTGAAAATGAAGATGATTACATATTTGACTCTACTCGCATTTATCAGCAGGTTGAAGTTTTTCCTAGTGAAACTGAAGCTCCAAAGATCCCGTATCCCCTCTATGTAACAGCAAAGAATTATGGGAATGTTGCTCGGTTTATGAACCACAGCTGTTCTCCAAATTTCTTCCTCTCAAAGCAGGACAGAGGAAAAAGAAATGCCTATGTGGATCAGCAAAATGTAGGGATTACTTTTGTTAATTGTCTGCTGAGTTCTGGATGGGTTGGCTTCCAGTTGTTTAGACTTGTGAAAAAGGTTTTTGTTAATTTGACAGACAGTATTAGCAAGGAACTTTAA	1803	0.4248	MENSLGQDSNPAHGSFDKSRVLNVKPLRTLVPIFPSPSNASSSSNSQGGAPFVSVSPSGPFPPGISSFYPFFFSPESQRFPEQNLQTPAAGVPAVPLNSFRTPTPRAKATTNGVAGSSRRSKKGFANGDDYSNSYQINFEVNETDAEDGSQDRRLISKKKKGRQGGDSAAVEVDLDKVSNDILKSINPIVFDVLNQPDGNKDAVSYTLMIFEVLRRKITQIEDLKDGNPGVARRPDLRAGTIMLTKGVRTNSKKRIGAVPGVEIGDIFFFRMELCAVGLHAPSMAGIDYMSVKFSQEEEPLAVSIVSSGGYEDNTEDGDVLIYSGQGGANGSDQKLERGNLALEKSLHRGNEVRVIRGLKDSTNPMGRIYVYDGLYKIQHSWVEKGRSGFSVFKYKLVRLPGQAEAYMTWKSIRQWTEKSTSRVGVILPDLTSGAEKVPVCLVNDVDSEKGPAYFTYCPSLRNLKPANPIDQSAGCEVIDNARVEELGVENEDDYIFDSTRIYQQVEVFPSETEAPKIPYPLYVTAKNYGNVARFMNHSCSPNFFLSKQDRGKRNAYVDQQNVGITFVNCLLSSGWVGFQLFRLVKKVFVNLTDSISKEL	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	142	169	-	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	96	129	-	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	103	118	-	-
	Lele16g1057	600	Gene3D	SET domain	409	481	IPR046341	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	33	55	-	-
	Lele16g1057	600	Pfam	SET domain	508	554	IPR001214	GO:0005515
	Lele16g1057	600	Gene3D	SET domain	482	561	IPR046341	-
	Lele16g1057	600	Gene3D	-	255	408	IPR036987	-
	Lele16g1057	600	SUPERFAMILY	SET domain	416	548	IPR046341	-
	Lele16g1057	600	SUPERFAMILY	PUA domain-like	239	418	IPR015947	-
	Lele16g1057	600	FunFam	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	240	418	-	-
	Lele16g1057	600	SMART	G9a_1	252	403	IPR003105	-
	Lele16g1057	600	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	477	550	-	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	34	53	-	-
	Lele16g1057	600	ProSiteProfiles	YDG domain profile.	257	399	IPR003105	-
	Lele16g1057	600	Pfam	SAD/SRA domain	256	403	IPR003105	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lele16g1057	600	MobiDBLite	consensus disorder prediction	146	167	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1057	Lele-ChrLele16	5966141	5969444	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1057	460	545	Su(var)3-9 homologs	AT1G73100	42.857	3.98e-12	67.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Lele16g1057		SET	3.7e-05	No_clan