Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1046 ATGGCACTGTCTTCCCCGGTTGAAGAGAATTTCCAAGACACTGAATCGCCGGAGACTCGAATTGGAAATGAGGGCCTCACAAAACGCATCCTCAAACCAGGACTCTCTTGGCAAACCCCATCTCCCGGAGACCAAGTCCAAGTTCATTTCAGAGGCCAGGTTCTCAATGGAGCGTCCCTTGAATCAAGTCACGATAAAGCGACCCCATTTCGCTTCAACTTAGGCCAACGTGAAGTTATCAGAGGTTGGGATGAAGGAGTTGCCACCATGAAAAAGGGGGAGAGAGCAGTTTTCAAAATACCACCGAACTTAGCGTATGGGGAGAAAGGTTCTCCACCATTGGTTCCTCCGAATGCGACTCTCGTCTTTGAGATTGAGATGCTGTCTTGGATTACCATCAGGGACTTGACCGGCGATGGAGGAATCCTGAAGAAGATAATAAGGGAGGGAGAGGGATGGGAGACTCCTAAAGACGCCGATGAGGTCTTAGGTAACAAAAATGGCAGCTTTCTGCAATCATTGATACAGTATGCACGAGACTTATACTTCTTACTTACAGTGAAATATGAAGCAAAGCTAGAGAATGGAACGCTTGCTCATGAGTCTAATGAAGGTGTAGAGTTTAATGTAAGTGATGGGTATCTTTGTCCTGCCATGAGCATAGCATTGAAATCGATGAGAAAGGGGGAGGAAGCAGAGCTCAGTTTAAGATTCTTTTATGGAAGTGCCCAACCAGATTCTAATTTAACAAGTCTCAGAGTAGAGCTGGTATCATGGAAAACTGTAGTCGATGTCACAGGAGATAAGAAGATACTTAAGAAGATCGAGAAAGCTGGAGAGGGATTTGAGCGTCCTAATGAAGGATCACAAGTGAAAGTAATATATACGAGTAAACTAGAAGATGGAACAATTATTGAGAGGAAAGGATCAGAGGAAGAACCCTTTGAGTTCACAACTCAGGAAGAACAAGCACCTGAGGGACTAGAAAAAGCAATCATGACAATGAGAAAAGGAGAGCAAGCCACTGTGGCTGTCATGGCTGAATATTTGTCTGATAAAAATACTTTTCCCACCACCCCAGCAAATAAAGTCCTTTATTATGAGGTCCAATTGGTTGATTTAATCAAGGAGAAGCCATTTTGGAAAATGGACAATCAGGAGAAAATAGAAGCTTGTGAGATGAAGAAGCATGACGGAAACTTATTGTTCAAGGCTGAAAAGTTCAGGCGTGCATCCAACAAATATGAAAAGGCTGTAAAATGCGTTGAGTTTGATCACTCATTCAGTGTTGATGAGAAACGTCAAGCCAATGCGTTACGGATATCTTGTTATTTGAACGATGCTGCTTGTAAACTTAAACTGGGAGATTATAGTGAAGCCTCAAAACTCTGTACTAAGGTTCTGGAACAAGATCCATTAAGTGTGAAGGCACTATATAGAAGAAGCCAAGCATACCTGAAAACATCAGATTTAGAGAAAGCTGAGGCTGACATTAAAAGAGCCCTCACTATTGATCCAAACAACAGAGACATGAGAGTTGAGTACAGGGAGCTGAGACTTAAGCAAAAGGAATACAGCAGATACGAAGCTGACATCTTCGGCACAATGCTTTCAAAGATGGGCTAG 1626 0.4287 MALSSPVEENFQDTESPETRIGNEGLTKRILKPGLSWQTPSPGDQVQVHFRGQVLNGASLESSHDKATPFRFNLGQREVIRGWDEGVATMKKGERAVFKIPPNLAYGEKGSPPLVPPNATLVFEIEMLSWITIRDLTGDGGILKKIIREGEGWETPKDADEVLGNKNGSFLQSLIQYARDLYFLLTVKYEAKLENGTLAHESNEGVEFNVSDGYLCPAMSIALKSMRKGEEAELSLRFFYGSAQPDSNLTSLRVELVSWKTVVDVTGDKKILKKIEKAGEGFERPNEGSQVKVIYTSKLEDGTIIERKGSEEEPFEFTTQEEQAPEGLEKAIMTMRKGEQATVAVMAEYLSDKNTFPTTPANKVLYYEVQLVDLIKEKPFWKMDNQEKIEACEMKKHDGNLLFKAEKFRRASNKYEKAVKCVEFDHSFSVDEKRQANALRISCYLNDAACKLKLGDYSEASKLCTKVLEQDPLSVKALYRRSQAYLKTSDLEKAEADIKRALTIDPNNRDMRVEYRELRLKQKEYSRYEADIFGTMLSKMG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1046 541 FunFam Peptidylprolyl isomerase 380 535 - -
Lele16g1046 541 SUPERFAMILY FKBP-like 136 260 - -
Lele16g1046 541 FunFam Peptidyl-prolyl cis-trans isomerase 18 131 - -
Lele16g1046 541 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 375 IPR001179 GO:0003755
Lele16g1046 541 MobiDBLite consensus disorder prediction 1 22 - -
Lele16g1046 541 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 43 131 IPR001179 GO:0003755
Lele16g1046 541 Pfam Tetratricopeptide repeat 452 508 - -
Lele16g1046 541 SUPERFAMILY FKBP-like 265 393 - -
Lele16g1046 541 Gene3D - 261 376 IPR046357 GO:0003755
Lele16g1046 541 SMART tpr_5 475 508 IPR019734 GO:0005515
Lele16g1046 541 SMART tpr_5 441 474 IPR019734 GO:0005515
Lele16g1046 541 SMART tpr_5 392 425 IPR019734 GO:0005515
Lele16g1046 541 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 185 239 IPR001179 GO:0003755
Lele16g1046 541 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 372 IPR001179 GO:0003755
Lele16g1046 541 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 38 128 IPR001179 GO:0003755
Lele16g1046 541 Gene3D - 2 132 IPR046357 GO:0003755
Lele16g1046 541 Gene3D Tetratricopeptide repeat domain 378 534 IPR011990 GO:0005515
Lele16g1046 541 ProSiteProfiles TPR repeat profile. 475 508 IPR019734 GO:0005515
Lele16g1046 541 SUPERFAMILY FKBP-like 17 132 - -
Lele16g1046 541 PANTHER PEPTIDYLPROLYL ISOMERASE 18 130 - -
Lele16g1046 541 MobiDBLite consensus disorder prediction 1 21 - -
Lele16g1046 541 SUPERFAMILY TPR-like 385 537 IPR011990 GO:0005515
Lele16g1046 541 Gene3D - 133 260 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1046 Lele-ChrLele16 5897213 5899970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1046 18 540 Calmodulin-binding Proteins AT5G48570 50.460 0.0 544