Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1033 ATGAGTAGCCTCATCGGGATTGATCCCCCTTGTGAGTTTTGTGGGACGACCATGATGTCCGGGTCACTAGAATACTGGAGGAATTACTTCCGGACTGCAAATTCTGATATATTCGATATAATTGACCATGCGATCATGGTGGCGGTTTCCGATTGTCCGAAGGAATTTCGATTTCGAAGAGACGGGATTGCGGAACGTTTGTTTTCTTGTAGATTGACTCGTTGTGTGGGATGTGATCGATTAGAGTTGGCGGTTTCCGGTGATGATGAGGAAGATGGAGGTTGTAAGAGTGGCTTTGATCGAGAAGCTACTGAATTAGAAGCAGGAGCTAGTAAAGAGAGCAAGGTCAATAGTAGCAGAGACGATCATGGGGAGATGAACAGGAACCGAGTTGGTAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCCATGATAGCAAGGAAGAGCCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTGACGGTGGATATTCTCAAGGGAACTGACATTGGAAAGGCTGTCAATCCTCTCAGGAAGCACGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGTCCACAGCAGCTATAGCAGGTTCAGCAGAAGGCACCCCAGATTCAGTCAATCCATCAGTCGTTGATGAAGAGGAAGGGCTTCCTTCGCCTCCTATGGATGAAGGGGCTTTTCTTGCAGCTCCACCCGGTCCAATGGAACTATCACAGTTCTTTGATGGCATGGATGATGATGGAAATTTTCGACAAAGTGGGGAATTTAACAAGACTCGTGAACACATCAGGAAACCATCTATGGACAGTCAAAACGTAGCAAAGAGAAAACCACAGGCTTCCAGTGAGTCCAAGGAGAGTAAATGTCATCAAATGAAAAAAAATGAGGTTGCTATGAGACAGAGTAAACCGGTCTGCACTGATTCTGGCCCTGGCAGGCCACCAAAATCCAGCTTGCAGCAAAAAAGCAACACAGGACCAAAGATGCAGCAGAAACAAGCGAAGAGTGCTATCCCAAAGAGGCCTCTTGTTGCTCAGCAAGATAAATTCAAGGGTTCAGATGATGATTCAGTCCAAGTAAAACTTGAAGCTACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATACAGGTTATGGAGTTGCATGATCTTCCAAAACAAGGGAATGGCCACCGAAATCCACACTTCAAGCCCGGGAACCTCAACAAGCATTGGGCCCACGGACGAAGATAG 1383 0.4599 MSSLIGIDPPCEFCGTTMMSGSLEYWRNYFRTANSDIFDIIDHAIMVAVSDCPKEFRFRRDGIAERLFSCRLTRCVGCDRLELAVSGDDEEDGGCKSGFDREATELEAGASKESKVNSSRDDHGEMNRNRVGNFSFGEAEALTDEIEEESQMVGEVLRIKEILHDSKEEPDSVLFESLRRLQLLALTVDILKGTDIGKAVNPLRKHGSKEIRQLARTLIDGWKEMVDEWVKSTAAIAGSAEGTPDSVNPSVVDEEEGLPSPPMDEGAFLAAPPGPMELSQFFDGMDDDGNFRQSGEFNKTREHIRKPSMDSQNVAKRKPQASSESKESKCHQMKKNEVAMRQSKPVCTDSGPGRPPKSSLQQKSNTGPKMQQKQAKSAIPKRPLVAQQDKFKGSDDDSVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGNGHRNPHFKPGNLNKHWAHGRR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1033 460 MobiDBLite consensus disorder prediction 434 460 - -
Lele16g1033 460 SMART TFS2_5 156 228 IPR003617 GO:0005634
Lele16g1033 460 MobiDBLite consensus disorder prediction 354 373 - -
Lele16g1033 460 MobiDBLite consensus disorder prediction 106 128 - -
Lele16g1033 460 MobiDBLite consensus disorder prediction 289 312 - -
Lele16g1033 460 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 151 238 IPR035441 -
Lele16g1033 460 Coils Coil 400 427 - -
Lele16g1033 460 CDD TFIIS_I 155 227 - -
Lele16g1033 460 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 19 448 IPR044805 -
Lele16g1033 460 ProSiteProfiles TFIIS N-terminal domain profile. 154 229 IPR017923 -
Lele16g1033 460 MobiDBLite consensus disorder prediction 282 398 - -
Lele16g1033 460 MobiDBLite consensus disorder prediction 237 262 - -
Lele16g1033 460 MobiDBLite consensus disorder prediction 106 130 - -
Lele16g1033 460 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 237 IPR035441 -
Lele16g1033 460 MobiDBLite consensus disorder prediction 320 338 - -
Lele16g1033 460 Pfam TFIIS helical bundle-like domain 178 226 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1033 Lele-ChrLele16 5818312 5821774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele16g1033 Med26 4.2e-12 No_clan