Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1030 ATGGAATATGATCAATTCATCGACCCAGCAGACCAAGCTTCTCAAGGTCCTTCGTCGGAAAAATACCTGCTCGGCTTCGTCTGCGCCCACGTCGTTGGGATTAAACACTATTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTACGATGAGAACGCCATTAAGGTCCTCAACACTCGAGAAACTCAAGTTGGGCATATTGAGCGCTCCGTCGCTGCCGTCCTGTCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATCGAGGCTTTTCCAACCGTGCAAGATGTGATTTCAGAAGGTGGGTTAGCTTTAATTTTAGTATCTGATGCGGCGTCTACGTTGTCAGAGTCTATGGCTATGAAAGATAAGAAGGCTAAGAATGAGTCGAAGACTGTAGATGATATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAAGGGTTCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTAATCTTTTCCTACATCAAAAGGAAGGCTTGGGGTGGTTAGTTCATAGAGAGAATTCTGGGGAATTGCCGCCATTTTGGGAAGAGAAAGATGGAGGCTTTGTGAATGTTTTGACTAATTATCGTACGGACACAAGGCCGGAGCCTTTGCGAGGTGGTATTCTAGCAGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCTTTGATTGCTCTTGATAAGGATTCTATTGCTCTAAATATGGAAGAAGGAAAGCATGATGAAATGGGGGAGCGCGATGAAGGATTCGCTGTCTCAAGTGGTAAGAAGGGTAAGAGGAGAAGAACAAATAAACAGACCACTGGATCAGAAAAAAGACGCAAGACTGGGAGTACTTCTTCAAAGTGCCATGTAAGTGGAAAATCTGTTGCTGTAGATGGCACACCTTCAACTGGCTTGGGTATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAAGAACATACTAAACCAGGCACATTGAAAACGTACATGTATTATGGTGATAAAAGGACCAAGGATGCTGAAGAACTTAAGATGTATGATTTAGTATTAACCACTTACACCACTTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATTAATAGAGTAGAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAGGCTATGATGAAAATTGCAGCTAAACGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTGTATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCGGAGCTTAGTGCAACTTCCTCTTGCTGGAAGAAACGCAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCACTGCGAAGAACAAAAGATAAAGCATTGGTAGAATTGCCTCCTAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCGAGAGCAAAGAACATAGTGGCAGGTTATTTAAATGAGGGAAGCTTAATGCGCAACCATTCCACTGTACTTGGTATAATTTTACGGCTTCGCCAAATTTGTACTGACATGGCATTGTGCCCTTCAGATCTCAAATCTTTACTCCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGACATTGTAATTACATGCTGTGCGCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTGCAGCGGAGCAAGGCCTGTTGTCCCCTTTGTCGTCAGCCCCTCAAAGAATCTGACTTGTTCTCCGCCCCACCTCAATCTTCTGATGCTGATGATGCTGGACTCTCCTCGGACAAAACAAGCGTATCCTCTAAGGTTTCTGCTCTGGTGAAACTTCTTGTTGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAATTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTAAAAGCAGCTGGTTTCAAGACACTACGCCTTGACGGGACCATGAATGCCAAACAAAGGGTTCGAGTTATGGAAGAATTTGCAGCTGGAGGAACAGATGGGCCTATGGTTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCTATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTAAGACTGATTGCTAAAAACAGCATTGAAGACAGGATATTGGAGTTGCAAGAGAAGAAGCAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGAGCAAAGGATAGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGGCCTTATGA 2595 0.4328 MEYDQFIDPADQASQGPSSEKYLLGFVCAHVVGIKHYSGTISGREMVGLVREPLNPYDENAIKVLNTRETQVGHIERSVAAVLSPLIDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIEAFPTVQDVISEGGLALILVSDAASTLSESMAMKDKKAKNESKTVDDIFKLVDENISKKGSLEALEPPRSVIKSNLFLHQKEGLGWLVHRENSGELPPFWEEKDGGFVNVLTNYRTDTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSIALNMEEGKHDEMGERDEGFAVSSGKKGKRRRTNKQTTGSEKRRKTGSTSSKCHVSGKSVAVDGTPSTGLGIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTKDAEELKMYDLVLTTYTTLATEESSPDSPINRVEWWRVILDEAHVIKNVNAKQSQAMMKIAAKRRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTKSYWRSLVQLPLAGRNANGLLRLQVLMATISLRRTKDKALVELPPKTVETCFVELLEEERKLYDQIESRAKNIVAGYLNEGSLMRNHSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRQPLKESDLFSAPPQSSDADDAGLSSDKTSVSSKVSALVKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRVRVMEEFAAGGTDGPMVLLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEDRILELQEKKQQLAKEAFGKRRAKDSREVGGDDFRMLLAL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1030 864 Gene3D - 168 281 IPR038718 -
Lele16g1030 864 MobiDBLite consensus disorder prediction 276 333 - -
Lele16g1030 864 CDD RING-HC_HLTF 618 658 - -
Lele16g1030 864 SMART helicmild6 722 807 IPR001650 -
Lele16g1030 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 854 IPR001650 -
Lele16g1030 864 Gene3D - 518 863 IPR027417 -
Lele16g1030 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 497 IPR027417 -
Lele16g1030 864 ProSiteProfiles Zinc finger RING-type profile. 619 658 IPR001841 -
Lele16g1030 864 Coils Coil 820 840 - -
Lele16g1030 864 Gene3D - 17 136 - -
Lele16g1030 864 SUPERFAMILY RING/U-box 603 664 - -
Lele16g1030 864 ProSitePatterns Zinc finger RING-type signature. 634 643 IPR017907 -
Lele16g1030 864 Pfam HIRAN domain 25 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele16g1030 864 Pfam Zinc finger, C3HC4 type (RING finger) 616 663 - -
Lele16g1030 864 Gene3D - 326 509 IPR038718 -
Lele16g1030 864 MobiDBLite consensus disorder prediction 276 294 - -
Lele16g1030 864 Pfam SNF2-related domain 198 578 IPR000330 GO:0005524|GO:0140658
Lele16g1030 864 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 148 860 - -
Lele16g1030 864 SMART ring_2 619 657 IPR001841 -
Lele16g1030 864 SMART ultradead3 191 482 IPR014001 -
Lele16g1030 864 Pfam Helicase conserved C-terminal domain 691 807 IPR001650 -
Lele16g1030 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 850 IPR027417 -
Lele16g1030 864 CDD SF2_C_SNF 688 818 - -
Lele16g1030 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 470 IPR014001 -
Lele16g1030 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 684 IPR013083 -
Lele16g1030 864 SMART HIRAN_2 24 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1030 Lele-ChrLele16 5805632 5809383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1030 2 864 RAD5 or RAD16-like Gene Family AT5G05130 62.543 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele16g1030 SNF2_N 2.6e-76 CL0023