Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1003 ATGTTGGCTTTATCGCCTTCTCTGTTAGCGCCCATTGAGTGGGCCCTGGAGGAACCCACGACAAGCCGTAATGGTCAGAACTTATTTTACAAAGACGGAACCACTCTTCCGTTTAGTTGCTCGCCACCGCCACCAGATCATCAGGTTCAGGTTCAGGTTGAGGAGGCTCAGAGATCTCCACCAATATCCCTTGCCGTAAGTGGAGACCCTACCATGGTCAAAAAGCTTAACCACAATGCCAGTGAACGCGATCGTCGCAAGAAGATCAATAGCGTGTATTCCTCACTTCGTTCTATGCTTCCTTTGTCTGAACAAACGAAGAAGTTAAGCATTCCGGCAACGATTTCACGAGTCCTAAAGTACATACCCGAGTTACAGAAGAGTGTGGGAGTGCTTGTCAAGAAAAAGGAGGAGCTTTTGTTGAGAATCTCTCGCCAAGGAGATGCGTCAAGCAAAGAATCTCGGAGGAAAATGGCTCATCACTACGCAGCCCCTGCTTTCGTAGTTTCAACAAGCAGGCTCAATGATAACGAATCTGTAATTCAGATTTCCTCTGACAAGCTCCACAAAACTCCTTTTTCAGAGATATTACTGTGTTTAGAAAAGGAAGGGCTTTTACTGCTAAATGCTTCCACCTTCGAGACCTTTGGACAACGGGTCTTCTATAACTTGCATTTGCAGATGGATGAAACGTGTAGAATAGAGCCAGAAATTCTAAGCGAGAAGATTTTGTCAGTATATGAGAGGAAGGAAGGGAATTTTCAATGTTTCTAA 774 0.4496 MLALSPSLLAPIEWALEEPTTSRNGQNLFYKDGTTLPFSCSPPPPDHQVQVQVEEAQRSPPISLAVSGDPTMVKKLNHNASERDRRKKINSVYSSLRSMLPLSEQTKKLSIPATISRVLKYIPELQKSVGVLVKKKEELLLRISRQGDASSKESRRKMAHHYAAPAFVVSTSRLNDNESVIQISSDKLHKTPFSEILLCLEKEGLLLLNASTFETFGQRVFYNLHLQMDETCRIEPEILSEKILSVYERKEGNFQCF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1003 257 FunFam Transcription factor ORG2 69 161 - -
Lele16g1003 257 Gene3D - 69 161 IPR036638 GO:0046983
Lele16g1003 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Lele16g1003 257 SMART finulus 79 131 IPR011598 GO:0046983
Lele16g1003 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 143 IPR036638 GO:0046983
Lele16g1003 257 CDD bHLH_AtORG2_like 74 146 - -
Lele16g1003 257 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Lele16g1003 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 243 IPR015660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1003 Lele-ChrLele16 5683943 5685104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1003 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.146 8.58e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g1003 HLH 3.9e-12 No_clan