Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0972 ATGCGCTTTTGTCTCTTCGATCTGTTCACTCAACTGGACTTCATGATAGCCAATTTGGTGAATAGTAATGGGTCTAGCTGCGGGATTCCAAATAAACCCTCATCTTCTTGCGAGTTGCGACGTCTCTTCCCGTTCCTCGTCACCGCACATCTGTCTTCTTCCCCATCAGTCGTTGCTGGCCCCGCTGTTGAACTACACTGCCGTCATCAACTGCGGCTAGTTTCTGCTCCGACGAGTAAAGGCATTATGGAAGTCGAGGAGGAACAGACTACGTCACCTGTTCCTGCAGAAACCTCTGTACCATCATCTGATGCTCAAAGCATGGTTTCTCCTGTTCCTGCTGTGCCGCCCCCACCAATGCAACCTGTAATTCCAACAGTCGTTCCACCATCTAGTGTGCCTCCTATTGCTCCAATTCCTTCAATTCCTCCCCCAACTACTCTCCGCCCTCTGGCACCACTTCCTGTTCGTCCACCATCTATTAGGCCACCCGTGTCGCAAAATGGTGAGGCTAGATCAACAGACTCGGATTCAGATCATGATGACTCAGCTCCTGGAATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAGAAGGCAATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGGCTCCGGCGTCTTGGTGAACCCATCACTCTTTTTGGTGAAAGGGAGATGGAGAGAAGGGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCTGAAGGGCAACTGGAAATACTGATGAAAGCTCATGAAGCTGAAGAGGCTGTTGCTTCTGCTGCAAAAGAAGAAGCCGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAATTTTCTTTTGTTAGAGCAGCAACACGCCTTAATCGTGCTCGAAGAAGAAGAGATGATCCAGATGAAGATATAGATTCTGAAATAGATTGGGCACTGAAGAAGGCAGAGAACTTAGTTCTTGATTGCAGTGAGATCGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGCTGCGAAGCTTTGGAGCATGCCTGAAGTTAAAAAAATTTCTACCTTAAAGGGGCACACAGAGCGCTCTACTGATGTTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCTTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTTCATCCATCTGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGGTGTGTATATGGGTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATCCTTGCACTAGAAGGTCACGTCAAACCGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACGTTATCTGGGCATGAAGCAAAAGTTACTTCTCTAGATGTTCTTGGAGAGGGACGGTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACACGGCTAGTGAACAAGCTATGGATGTCGACTGA 1773 0.4794 MRFCLFDLFTQLDFMIANLVNSNGSSCGIPNKPSSSCELRRLFPFLVTAHLSSSPSVVAGPAVELHCRHQLRLVSAPTSKGIMEVEEEQTTSPVPAETSVPSSDAQSMVSPVPAVPPPPMQPVIPTVVPPSSVPPIAPIPSIPPPTTLRPLAPLPVRPPSIRPPVSQNGEARSTDSDSDHDDSAPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEILMKAHEAEEAVASAAKEEAEEDLQYPFYTEGSKALLDARVDIAKFSFVRAATRLNRARRRRDDPDEDIDSEIDWALKKAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAAKLWSMPEVKKISTLKGHTERSTDVAYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRCVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVWSARDFKPVKTLSGHEAKVTSLDVLGEGRYIATVSHDRTIKLWSSNTASEQAMDVD 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 522 - -
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 434 IPR001680 GO:0005515
Lele16g0972 590 ProSitePatterns Trp-Asp (WD) repeats signature. 504 518 IPR019775 -
Lele16g0972 590 Pfam WD domain, G-beta repeat 437 475 IPR001680 GO:0005515
Lele16g0972 590 Pfam WD domain, G-beta repeat 486 517 IPR001680 GO:0005515
Lele16g0972 590 Pfam WD domain, G-beta repeat 398 434 IPR001680 GO:0005515
Lele16g0972 590 Pfam WD domain, G-beta repeat 541 578 IPR001680 GO:0005515
Lele16g0972 590 Coils Coil 274 294 - -
Lele16g0972 590 MobiDBLite consensus disorder prediction 140 162 - -
Lele16g0972 590 CDD WD40 366 587 - -
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 526 IPR001680 GO:0005515
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 587 IPR001680 GO:0005515
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Lele16g0972 590 MobiDBLite consensus disorder prediction 140 201 - -
Lele16g0972 590 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 342 526 - -
Lele16g0972 590 SMART pr04_2 227 280 IPR014906 -
Lele16g0972 590 Gene3D - 203 271 IPR036285 -
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 434 - -
Lele16g0972 590 MobiDBLite consensus disorder prediction 84 111 - -
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 484 IPR001680 GO:0005515
Lele16g0972 590 SMART WD40_4 351 392 IPR001680 GO:0005515
Lele16g0972 590 SMART WD40_4 478 517 IPR001680 GO:0005515
Lele16g0972 590 SMART WD40_4 395 434 IPR001680 GO:0005515
Lele16g0972 590 SMART WD40_4 539 578 IPR001680 GO:0005515
Lele16g0972 590 SMART WD40_4 436 475 IPR001680 GO:0005515
Lele16g0972 590 SUPERFAMILY PRP4-like 210 265 IPR036285 -
Lele16g0972 590 Gene3D - 535 587 IPR015943 GO:0005515
Lele16g0972 590 SUPERFAMILY WD40 repeat-like 359 582 IPR036322 GO:0005515
Lele16g0972 590 MobiDBLite consensus disorder prediction 91 109 - -
Lele16g0972 590 Pfam pre-mRNA processing factor 4 (PRP4) like 232 258 IPR014906 -
Lele16g0972 590 ProSitePatterns Trp-Asp (WD) repeats signature. 462 476 IPR019775 -
Lele16g0972 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 480 - -
Lele16g0972 590 Gene3D - 454 534 IPR015943 GO:0005515
Lele16g0972 590 PANTHER WD40 REPEAT PROTEIN 534 579 - -
Lele16g0972 590 Gene3D - 346 453 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0972 Lele-ChrLele16 5511224 5515602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0972 377 577 Miscellaneous Gene Families AT5G08390 27.723 4.22e-21 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1474 13 24174241 24181335 Lele16g0972 16 5511224 5515602 hybridization
Lele14g1401 14 22558628 22566204 Lele16g0972 16 5511224 5515602 hybridization