Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0934 ATGTTGCTTAGTATTCATTCAACTCCATGTTTGTGCGTTGTTCGAAGAATGCAGTCAAATATGAGCAGCAATAAGCTGTATGCGACCTGTTCTCAAGCTCAGTGCCATGGCCTGGGTAATGAAGCCTTCTCGAGGGACAACATGGTCACATATCTGCCTTCTACTCTTCTTTTACGGTGGCCAGATGGTGAAACTAATGAAGAACATCAACAAACATTACTTCCTGTCCCTAGCGTGCCTTCAACAGTAACTGAATTTTTTGCTCAACAATCACAGTTGGAGTATGCTGGCCCCTCAATGGCATGTGCTCCTTACCCATATTCAGGTCCCAATTACGTAGGAGTCACCTCAAGTCATGGGCCTCAGCCTCTGGTGCATCCTCATGGGGTAGGAGTTCATACCGCCCAAATGGTCTTACCGCTGGAAATTGCAGAGGAGCCTGTTTACGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTAATAAAAGGAAGGAAGCCTTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGCGGCCGTTTCCTCAACACAAAGAAGCTTAATGATACAACTTCTGCCAACACTAGAACCAACAACGAGGATGCTGCAACTTCTGACCTTGATTCAAACTCAACTTGTGATGAATACAAGCACCGCGCACACGTTCAGGGATTTGATCTTGAAGGTGACTTCTCGGCACAGAAGGCTAAACCGCTCAATCACACTGGGATTGGCAGAGTCCTCACCATTAATTAA 816 0.4657 MLLSIHSTPCLCVVRRMQSNMSSNKLYATCSQAQCHGLGNEAFSRDNMVTYLPSTLLLRWPDGETNEEHQQTLLPVPSVPSTVTEFFAQQSQLEYAGPSMACAPYPYSGPNYVGVTSSHGPQPLVHPHGVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLNDTTSANTRTNNEDAATSDLDSNSTCDEYKHRAHVQGFDLEGDFSAQKAKPLNHTGIGRVLTIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0934 271 MobiDBLite consensus disorder prediction 208 231 - -
Lele16g0934 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 146 201 IPR001289 GO:0003700|GO:0006355
Lele16g0934 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 239 IPR001289 GO:0003700|GO:0006355
Lele16g0934 271 SMART cbf3 143 204 IPR001289 GO:0003700|GO:0006355
Lele16g0934 271 Gene3D - 144 205 - -
Lele16g0934 271 MobiDBLite consensus disorder prediction 208 230 - -
Lele16g0934 271 ProSiteProfiles NF-YA/HAP2 family profile. 144 204 IPR001289 GO:0003700|GO:0006355
Lele16g0934 271 ProSitePatterns NF-YA/HAP2 subunit signature. 149 169 IPR018362 GO:0003677|GO:0016602
Lele16g0934 271 PRINTS CCAAT-binding transcription factor subunit B signature 178 201 IPR001289 GO:0003700|GO:0006355
Lele16g0934 271 PRINTS CCAAT-binding transcription factor subunit B signature 147 169 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0934 Lele-ChrLele16 5299801 5303244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0934 94 234 CCAAT-HAP2 Transcription Factor Family AT5G12840 48.649 3.13e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele16g0934 CBFB_NFYA 8.4e-26 No_clan