Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0931 ATGAACCACTTGACTGTAGAAACTGAAGATGGTTTTGCAAGCCTGCTTGACCTTGCAGCCAATAATGACGTCGAGCATTTCAAAAGAGCAATTGAACGCGATCCTTCCTCTGTAGATGAGGTTGGACTGTGGTATGGTCGCCAGAAGGGGTCAAAGCAGATGGTCAACGAGCACCGAACGCCATTGATGGTTGCTGCTACTTATGGTAGCATTGATGTCATCAAGTTGATTCTTTCATTATCTGATGCTGACATTAATAGGTCATGTGGGCTTGACAAAAGCACAGCCCTTCATTGCGCGTCATCAGGTGGGGCTGTAAATGCTGTTGATGTGGTGAAACTGCTTCTGGCAGCTGGTGCTGATCCAAATTCTGTCGATGCCAATGGTTGCTATCCTGTTGATGTTATTGTGGTACCTCCCAAGCGTGCACATGTGAGAATTATTCTTGAAGAACTTCTTCAAACAGATTCTTCAATGGCAGGGTGTGGTCTTAGGGTGGTAACGGCTACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCAGAGAATGGATCTCCTTCTACACTAGAGCTCCTGAAGCTAAAGTTAAAGGATGCTAACACTTTTTCTGCATCAGAGAAGAAAGAATATCCCGTTGATCCATCTCTTCCCGACATCAAAAACAGCATCTACTCAACTGATGAGTTCAGAATGTATTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACCGAATGTCCTTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTCCCATGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCAGTTGCTCAAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTAGGCCGTTGTATGTTTCAACGGGTTCTGCTGTTCCATCACCACGCTCGAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCCTGTTACCTGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCACCTATGTCACCTTCTGCCACTGGCATGTCACATTCTTCTGCTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCGGGAAGTAATATTCACTCCAGTCGTTTGAGATCCTCATTCAGTGCTAGAGATATACCCGTGGAAGACTTTGATTTGTTGCCGGACTATGATTTTCAGCAACACCAACTACTAAATGAGATGTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAACCTAAACCGCTCTGGTCGTATGAAGACCATGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCGGATCCAACATTGAGTTCAGCCGTCTTTTCACCCACACACAAATCAGCTGTCCTTAATCAGTTTCAGCAGCAGCAAAGCTTGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTTGAGCATCCTTTTCTACAGGCCTCATTCCAAACGTCAGGAAGGATGTCTCCACGTAACGTGGAACCTATCTCACCAATGAGCACTAGGCTTTCTGTGCTAGCTCAACGCGAAAAGCTGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCTCCAACTCTGCTGCTGCTGTTGCTGCTGGTGGCGGTTTCAGTGACAGTTCTTGGTCAGAATGGGGATCCACCAACGGTAAACTGGATTGGGCTGTCAATGCTGATGAATTGGGCAAGCTTCGCAGGTCCTCGTCATTCGAGTTTGGGAGCTACGGTGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTTCAACTGAGATTAAGGAGAAATTGGTAGCAGCCGTCTCTAGCGAGGGATCGAACATGAACACTCAAATATGA 2004 0.4671 MNHLTVETEDGFASLLDLAANNDVEHFKRAIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSDADINRSCGLDKSTALHCASSGGAVNAVDVVKLLLAAGADPNSVDANGCYPVDVIVVPPKRAHVRIILEELLQTDSSMAGCGLRVVTATTNSNSPPPSTSPENGSPSTLELLKLKLKDANTFSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSAAWPQPNVPNLHLPGSNIHSSRLRSSFSARDIPVEDFDLLPDYDFQQHQLLNEMSCLSQQSMNSNNLNRSGRMKTMTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVEHPFLQASFQTSGRMSPRNVEPISPMSTRLSVLAQREKLQQFRSLSSRDLGSNSAAAVAAGGGFSDSSWSEWGSTNGKLDWAVNADELGKLRRSSSFEFGSYGEEPDLSWVQSLVKESSTEIKEKLVAAVSSEGSNMNTQI 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0931 667 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele16g0931 667 Gene3D - 9 160 IPR036770 -
Lele16g0931 667 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
Lele16g0931 667 MobiDBLite consensus disorder prediction 370 393 - -
Lele16g0931 667 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Lele16g0931 667 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Lele16g0931 667 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Lele16g0931 667 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele16g0931 667 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lele16g0931 667 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele16g0931 667 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Lele16g0931 667 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Lele16g0931 667 SUPERFAMILY Ankyrin repeat 6 150 IPR036770 -
Lele16g0931 667 PANTHER UNKEMPT FAMILY MEMBER 17 643 IPR045234 -
Lele16g0931 667 Pfam Ankyrin repeats (3 copies) 50 126 IPR002110 GO:0005515
Lele16g0931 667 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Lele16g0931 667 Gene3D - 269 332 - -
Lele16g0931 667 MobiDBLite consensus disorder prediction 168 188 - -
Lele16g0931 667 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0931 Lele-ChrLele16 5282121 5284124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0931 6 646 C2H2 Transcription Factor Family AT5G12850 55.505 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele16g0931 Ank_2 1.2e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0931 16 5282121 5284124 Lele05g0888 05 5461226 5462056 CCT
Lele16g0931 16 5282121 5284124 Lele06g0744 06 4579842 4580672 CCT
Lele16g0931 16 5282121 5284124 Lele07g0927 07 5533202 5534032 CCT
Lele16g0931 16 5282121 5284124 Lele08g0744 08 4632222 4633049 CCT
Lele13g1514 13 24418926 24421228 Lele16g0931 16 5282121 5284124 hybridization
Lele14g1434 14 22784187 22786301 Lele16g0931 16 5282121 5284124 hybridization