Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0930 ATGGGAACTTGCAGAAACTCTCCCTTGAAGCCATGGAGGAAGGGGCCAGCCAGAGGGAAGGGTGGCCCTCAGAATGCTTTGTGTGAATATCGAGGAGTTCGACAAAGAACGTGGGGCAAATGGGTTGCTGAAATAAGAGAGCCGAAGAAGAGAACCAGGCTGTGGCTTGGTTCTTTTGCCACTGCTGAAGAAGCTGCTATGGCTTATGATGAAGCTGCCATGAGACTCTATGGTCCTGATGCTTACTTCAATCTTCCTCACCTTCAACCAGCCTCCAGTTCCGTTAGAACGTCTCAGAAGTTCAAATGGTTTCCTTCCAAGAAGTTCCTTTCAATGTTTCCTTCTCGTGGACTCCTCAATGTAAATGCCCAGCCTAGTGTTGACTTAATCCATCAGAGGCTACAGCAACTTGAGCACAAAGGGTTTTTAAGTCAGATCTCTTCTAGTTTATCCAGTGATCCAAGTGCAGATATTCAGATGACATGCAGCAAAAATGTCGACACTCCTCCAAAGGCACAAAAAGCTGAAGAAATATTAACAAATATCACGGTCGAAGATTTTGAGGAAAACCCCCAGATTGATCTCCATGAGTTTCTTCAACAGCTGGGTATTCTGAAAGAAGAAAGACAATCACAAAGATCTAATAATAGCTCAGGAAGTTTCAGAGACTGA 672 0.4449 MGTCRNSPLKPWRKGPARGKGGPQNALCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAAMRLYGPDAYFNLPHLQPASSSVRTSQKFKWFPSKKFLSMFPSRGLLNVNAQPSVDLIHQRLQQLEHKGFLSQISSSLSSDPSADIQMTCSKNVDTPPKAQKAEEILTNITVEDFEENPQIDLHEFLQQLGILKEERQSQRSNNSSGSFRD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0930 223 MobiDBLite consensus disorder prediction 1 24 - -
Lele16g0930 223 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lele16g0930 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 218 - -
Lele16g0930 223 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lele16g0930 223 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lele16g0930 223 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0930 Lele-ChrLele16 5278056 5278727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0930 5 214 AP2-EREBP Transcription Factor Family AT3G57600 62.085 1.81e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g0930 AP2 4.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0888 05 5461226 5462056 Lele16g0930 16 5278056 5278727 CCT
Lele13g1515 13 24424849 24425486 Lele16g0930 16 5278056 5278727 hybridization
Lele14g1435 14 22790107 22790958 Lele16g0930 16 5278056 5278727 hybridization