Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0929 ATGAGTTGGGAAGCATCAGGTAACTGGCTTATGGGGAAATCTCTTATTGAGTTCCAGTCTACCAAAGGAGATGTTCTTCCCGCACATAACTTCAGTACACATGACGTTGTTGTTTTAAAACTCAGCAAGGCTGATTTAGGTTCCCTTGCTCTTGGACAAGGTGTAGTTTACCGCTTAAAGGACTCCTCGATAACAGCTGCCTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTCAGGCTGGAGAAAGTGGCAAATGAGGTGCAGCTAACTCCCCATGAGGTGAAGGATGCATTAATACAGTTGAGTAAAGGAGGGCATAAGGGTCCTGCTGCTGACCTAATTCCTGTCTTGTTCGGAGAGAGGCCACCAACAGTGTCCAAGAAGGATGTGTCATTCACTCCATTTAACCCCAACCTTGATCACTCTCAGAAAGGTGCAATCTCGAAAGCCCTATCGTCAAAGAATGTGTTTTTGCTCCATGGGCCTCCTGGAACAGGAAAAACGACCACAGTGGTGGAAATCATATTACAAGAAGTGAAGTGTGGATCAAAAATTCTTGTTTGTGCCGCCTCTAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTCCGCTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTTGACAGTGCACTGGATGCTCAGGATGTGTTTGTGTTACCCTTCGTAGAGTATTCTGCTATTTCACTTGGTGCGATTGAGGACATTGCTGATGTGATATTGACCACTTTGATTGGGGCTTTTTCGAAGAAGCTGGATAACACTTCATTTGACTTGGTCATTATTGACGAAGCTGCTCAGGCACTTGAGATAGCATGCTGGATACCTATGCTGAAGGGTTCAAGATGTATACTTGCAGGAGACCATCTTCAACTTCCACCAAACATTCAAAGTGTTGAGGCCGAGAAGAAAGGATTAGGACGAACCCTCTTTGAACGACTTGCAGATATGTATGGAGATGAAGTCACATCTATGCTAACTGTTCAGTACCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTCAACAACAGCAAGGATGTGAAGAGGACCTCTTCAACTGAACCAACACTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGTACCATGAATGAAGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCTAATTCAAGAAAAGAGGTGTGCTTTCTGAGTGATCGGCGCCGAATGAATGTGGCTGTGGCGAGGGCGAGGAGGCAATGCTGCCTTGTCTGTGACACAGAAACCGTCAGTTCTGATGGATTCCTAAAGCGATTGGTTGAGTATTTTGAAGAGAATGGGGAGTATCAGGGTGCATCTGAATATCAGCATGAACAGACCTAA 1449 0.4444 MSWEASGNWLMGKSLIEFQSTKGDVLPAHNFSTHDVVVLKLSKADLGSLALGQGVVYRLKDSSITAAFDDIPEDGLNSPLRLEKVANEVQLTPHEVKDALIQLSKGGHKGPAADLIPVLFGERPPTVSKKDVSFTPFNPNLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKCGSKILVCAASNIAVDNIVERLVPLKLVRLGHPARLLPQVLDSALDAQDVFVLPFVEYSAISLGAIEDIADVILTTLIGAFSKKLDNTSFDLVIIDEAAQALEIACWIPMLKGSRCILAGDHLQLPPNIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELNNSKDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEVDGFQGREKEAIIISMVRSNSRKEVCFLSDRRRMNVAVARARRQCCLVCDTETVSSDGFLKRLVEYFEENGEYQGASEYQHEQT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0929 482 Gene3D - 239 344 IPR027417 -
Lele16g0929 482 Gene3D - 73 233 IPR027417 -
Lele16g0929 482 SMART ultradead3 137 346 IPR014001 -
Lele16g0929 482 Gene3D - 388 482 IPR027417 -
Lele16g0929 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 455 IPR027417 -
Lele16g0929 482 CDD DEXXQc_SMUBP2 140 346 - -
Lele16g0929 482 Pfam AAA domain 386 449 IPR041679 -
Lele16g0929 482 Pfam AAA domain 322 363 IPR041679 -
Lele16g0929 482 SMART AAA_5 155 470 IPR003593 -
Lele16g0929 482 CDD SF1_C_Upf1 347 466 IPR041679 -
Lele16g0929 482 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 252 393 - -
Lele16g0929 482 Pfam AAA domain 141 228 IPR041677 GO:0004386
Lele16g0929 482 Pfam AAA domain 250 313 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0929 Lele-ChrLele16 5271472 5277252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0929 114 282 Core DNA Replication Machinery Family AT1G08840 31.073 7.40e-14 72.4