Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0924 ATGGCCGATCCTTTCTCCAATTTCTTCTCTCCTCCTTCTTCCTCTGGATTTTTCCAATTTAATCCCATCCCTTACTATTATCCTCCTCCTCCCACTCCTTCTCCAGTATCTCACCAACATCAGCATCAGCATCCCTATCTCCACAACTTCATCGCTTCTTCTTCGCCTTCTACTTCCCCACCTCTCAGAGAAGCCCTCCCTCTTCTCAACCTCAACCCCACTAATAAGCCACATCATGGTCATAACCAGTACTCTTGCAGTACTTCCATGGAAGTGGAGGACGCTGCTGCTCCTAAGACTAAAGAAGAAGACGATGAAGAGGAGGATGAGGTAGATGATGACAATAGTGTGACTGTTGCACTCCACATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTTCCTCCTCTCAAGCACCAGAAGCAGTAGCAGCAGGAGATGGCGATGCTCTTGTTGATAATTCTTGCTCTGGACTCTCCAGGCTCAACAAGGGCCAGTACTGGATCCCTACTCCTACTCAGATTCTCATTGGTCCTACACAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGTACACAACCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCAAGGTTGCAGGAACAACATTGACCACCCAAGGGCTAAGCCCCTTAAGGATTTTAGAACCCTTCAGACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAAGCTTTCGCTGTGAGAGGCGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCCGCTTATGGGATCGATGGCTTCGACGAAGAAGACGAGCCAGCATCTGAAGTAGAGCAAGATAATGAATCCACCCAGTGA 1047 0.4833 MADPFSNFFSPPSSSGFFQFNPIPYYYPPPPTPSPVSHQHQHQHPYLHNFIASSSPSTSPPLREALPLLNLNPTNKPHHGHNQYSCSTSMEVEDAAAPKTKEEDDEEEDEVDDDNSVTVALHIGLPSPSAAEMASILSSSSSQAPEAVAAGDGDALVDNSCSGLSRLNKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFDEEDEPASEVEQDNESTQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0924 348 FunFam zinc finger protein WIP2-like 186 209 - -
Lele16g0924 348 MobiDBLite consensus disorder prediction 328 348 - -
Lele16g0924 348 Pfam Zinc finger, C2H2 type 187 206 IPR013087 -
Lele16g0924 348 MobiDBLite consensus disorder prediction 100 114 - -
Lele16g0924 348 MobiDBLite consensus disorder prediction 75 90 - -
Lele16g0924 348 Gene3D Classic Zinc Finger 249 323 - -
Lele16g0924 348 SUPERFAMILY beta-beta-alpha zinc fingers 253 291 IPR036236 -
Lele16g0924 348 SUPERFAMILY beta-beta-alpha zinc fingers 182 209 IPR036236 -
Lele16g0924 348 MobiDBLite consensus disorder prediction 330 348 - -
Lele16g0924 348 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Lele16g0924 348 PANTHER ZINC FINGER PROTEIN WIP2 40 345 IPR043584 GO:0003700|GO:0010468
Lele16g0924 348 SMART c2h2final6 187 209 IPR013087 -
Lele16g0924 348 SMART c2h2final6 271 291 IPR013087 -
Lele16g0924 348 SMART c2h2final6 234 266 IPR013087 -
Lele16g0924 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Lele16g0924 348 FunFam Zinc finger protein WIP2 240 322 - -
Lele16g0924 348 Gene3D Classic Zinc Finger 186 209 - -
Lele16g0924 348 MobiDBLite consensus disorder prediction 50 115 - -
Lele16g0924 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0924 Lele-ChrLele16 5238986 5241226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0924 1 348 C2H2 Transcription Factor Family AT3G57670 62.404 2.52e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g0924 zf-C2H2 0.0043 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0893 05 5501649 5503837 Lele16g0924 16 5238986 5241226 CCT
Lele13g1520 13 24466609 24468842 Lele16g0924 16 5238986 5241226 hybridization
Lele14g1440 14 22824655 22826929 Lele16g0924 16 5238986 5241226 hybridization