Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0902 ATGGGCTCTGCAAAATCGTCTACCACCATTATGGGCGGTTTTGAATCCCCGACTTCCGCTTTTTATGCAACAGAACGATGCATGGGGTTTCCGCAATATCATTCCCAAGTTAACATAAATAATCCCTCTTTGGGCTCTCCATTCTCTAAGATTCACGATTTAGAACTCCCTTTGTATCAATCTCCCAGGGAAAACACCTTCTTGGATCATTCGCCACACCAAGCTAACTTCAACGACGAATTATCAAACACCTTGCGAGAAGTGGTTAGATCCCAATTCGACCCGGAAAAACCCAATAAAACTCCATGTGGAAATCTGCCAAGCGGCAAGTTTCTTCCAATTGAACAGCACAAATTGTTCATTGATGATGATTCTTCCTCAGTCAGGAGAAACCAAACAGTTGGTTGTGGGTCATATAATTTACCTGTTTCTCGTGTAAGCTTCTCTTCACAGCAAGAGAAGCTGTCTCCTCCAATAGTTTCAGCAGCAAATGTTACAACTACTGGAAATCCAACTTCTAGTGGTGGGGCAGTAATCTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCACGACAAGTTTGTTGAATGTGTGAATCGCCTTGGGGGTGCTGAGAAGGCTACCCCAAAAGCTATATTAAAGCTGATGGACACAGATGGCCTCACTATCTTCCATGTTAAGAGTCATTTGCAGAAATATAGAATTGCCAAATACATGCCAGACCCAGCTCAAGGGAAGTCTGACAAAAAAGCCCATATAGACGATGTGCATCATATTGGTGTCAAAACTGGCTTGCAAATCAGGGAGGCTCTTCAGCTACAGCTAGATGTTCAGAGGCGTCTCCATGAACAGCTAGAGATTCAGAGAAGATTGCAGCTTCGAATTGAAGAGCAGGGAAAGCAGCTGAAGATGATGTTTGATCAGCAGCAGAAAACATGTAATAGCAGCTTCACGAATTTGGGCAGTACAGAAAATGATGATCCATCAGTTAGTCATAAAGAGGTTGATGTTTCGATTGCCGAAGGGTCTGGAAATTCCTCCTTCTCTTCCAAGATAAGTTAG 1065 0.43 MGSAKSSTTIMGGFESPTSAFYATERCMGFPQYHSQVNINNPSLGSPFSKIHDLELPLYQSPRENTFLDHSPHQANFNDELSNTLREVVRSQFDPEKPNKTPCGNLPSGKFLPIEQHKLFIDDDSSSVRRNQTVGCGSYNLPVSRVSFSSQQEKLSPPIVSAANVTTTGNPTSSGGAVISSKTRIRWTQDLHDKFVECVNRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQKYRIAKYMPDPAQGKSDKKAHIDDVHHIGVKTGLQIREALQLQLDVQRRLHEQLEIQRRLQLRIEEQGKQLKMMFDQQQKTCNSSFTNLGSTENDDPSVSHKEVDVSIAEGSGNSSFSSKIS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0902 354 Pfam MYB-CC type transfactor, LHEQLE motif 266 313 IPR025756 -
Lele16g0902 354 SUPERFAMILY Homeodomain-like 180 236 IPR009057 -
Lele16g0902 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 239 IPR017930 -
Lele16g0902 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 175 333 IPR044848 GO:0003700
Lele16g0902 354 Coils Coil 269 289 - -
Lele16g0902 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 237 IPR006447 GO:0003677
Lele16g0902 354 Gene3D - 181 240 - -
Lele16g0902 354 FunFam Myb family transcription factor 181 239 - -
Lele16g0902 354 MobiDBLite consensus disorder prediction 317 354 - -
Lele16g0902 354 Pfam Myb-like DNA-binding domain 186 235 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0902 Lele-ChrLele16 5081087 5082965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0902 165 335 G2-like Transcription Factor Family AT4G28610 50.289 1.22e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele16g0902 Myb_DNA-binding 2.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1545 13 24612084 24614137 Lele16g0902 16 5081087 5082965 hybridization
Lele14g1463 14 22993102 22995127 Lele16g0902 16 5081087 5082965 hybridization