Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0897 ATGGCGTCTAAAGGTCCGAGGTCTAAGATTGATCACGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGATAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTCTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAGAAACAGTCACCGGAGCATCATAGGAGTGCCCAATACAAGGGAGTAGATGAAGACGTTATCGACAAATATAATGAAGCCAATGCTGCAGAGTTTCAGTCAGATCCTATTGACAATGATGAAGAATACAATGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGTTCTTATAACTGAAGAGGAAAGGCAGGAGGAGTTGGCAGCTTTGCATGATGAAGTTGATCTTCCGCTTGAGGAGTTACTGAAACGATATTCTGGAGAGAAAGGACCAGTTAGTGAAGAAAGTAGTCCAGACCACAGTGATGATGATAATAACGTAGTCAGAGCTGGTGATGAAAATGAAAATGGAGACAATATTTTATCTGTTAGCAAGCTTTTCTCAAGTAACTCCAGCATGGTCTCTGGTCGTCGTTGTGATGAAAGCAATGGTGGTCTAACTACACCAGCAGATAATATAGCCGAAGAAAAGACCTGTCAATCTGAAAATCTTGCATATGACTTTAGTGATGAAGAGGAAGATGGTGACTTCTTGCTTGCCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGATGCAATTGATCCCAAAGATGAGATTGCTTTATTACAAAGGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAATTGGCAAAGATAGGGAAGATGAATCTGAAGATGCTGCTTCTTTGTCGGAAGATCTTTTGGATTCTTCACTTCATGAAGATGATAGGAAGAAGGATAGTGCTGTTTCTGTGGATGAAGATGTCAAGCCTGTTGAGCACATGGCTTTTGTACAATCACAGACTGAAGAACAACATTGGGAAGCACCTCATGAAAATCCGGAGGGAAGGGATAGTGAAAATCTGATAGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACTAAATTCCCTTTTCTCCTCAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGATTGGCTTGAAACAATGTATGAAAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGGATTTGGGGCCCACATCTTATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTCAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACCCTCTTGAATTTCAATTCCAAGCGACGTATTCTCTTGACTGGTACACCACTACAGAATGACCTGATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAATCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCCATATCTGGGATGGTGGAGGGGGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGCTTGCACAATGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACCGAGACCCAAGCCACTCTTGCGAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTTTTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGTTCTCAACCAGCCCCTTTTCATCGGTAGACCTAAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACACCTGCAAGTTTAATTATGGAGCGTGCTGATATGAATGGCCTACAAGTAATTAGGCCTAAATCGAAGGATCAGAGAATTTTTCAAGGAACTAACATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCAAAGGAACGTGCAGCAGCTATTGCGTGGTGGAATTCCTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAACCCTTCAGGATCTTCTTACCATTAGGGATCCTGTATATGACATCCATCAGGTGAAGGCTAACCCTAGGTCATACATGTATTCCTCAAAGCTAGCTGACATTGTCCTCTCACCAGTTGAACGTTTCCAAAGGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCCCCTCCTGTTTGCTGGTGCAGCAGAAGTGAAATGCCAGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTGTCGCCAATCAGGCCAGCAATTGTCCGACGGCAGGTGTATTTCCCAGATAGGTGTCTTATCCAATTTGACTGTGGGAAACTGCAGGAACTTGCAAGATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACGCAGATGACAAAGATGCTTGACATACTGGAGGCTTTCATTAATCTGTATGGTTACACTTACATGAGATTAGATGGATCAACACAACCAGAAGAGAGGCAAACCTTGATGCAACGTTTTAATACAAACCCTAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCCGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAAAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATACAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAGTTATTTTCGGGTCATAGAACACTTCCAGTGAAAAACATGCAGAAGGAGAAAAGCCAGAACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATGTGGAAGCAGCATTGAAATATGCCGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTCACAGAGGAAGCTATTGGGAGACTTGATGAGGATGAGTATGTAAATGAAGATGATACAAAAGTTGATGAGCCTTCGGAATTAGCTGAATCAGTTTCTAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTTTCTGTTTCTATCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAGATGGCTGCGGCGGCGGCGGCAGCTGGACAAGCTATCTCAGCCTTTGAGAATCATCTACGCCCAATTGATCGGTATGCCATTCATTTTCTGGAGGTGTGGGATCCGATTATAGATAAAGCAGCCTTGGAATCTGAAGTCTTTGAGGACACAGAATGGGAATTGGATCGTATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTTTATGAAAGATGGGATACTGATTTTGCGACTGAGGCATATCGGCAGAAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAGAATGAAGCTAAGCTGAAAGAAGAGGCTGATGAAGAAAATTGTGATCCTGGAAAGATGATGTTTTATTTATGTTTTGGCAGAATTCAAACACTGAGGGATTCTAAGCCCAGACCTAAAAAGAAGCCCAAGAAAACCAAGTTTAAATCCCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAACCTATGAAAGAAGAACCACAAACAGACCCAATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCTGGTGTCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGACTGCAAAGAGAAGACACTAAAGAAGTCCAAGAAGACCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTCCCAGATGACCGTGCAGAATCAAAGCAATGTGAAAGTGTGGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCCAATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATGCTTGGTCCAAAGATGGGGTTCCATCAGCTGATTTTTGGCTGCCACAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGTGAAACACTCTATGGTATGACTGCTGGAGGATCATACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTAGTCCAAAAATATGTTTTGTCAACGGGAGACAATGCTAATCATGAGAGGGGAAACAATACTGCCTCTGGAAAGTCTCTTCTGAAAGTCACGGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAGGAAAATAGGGAGTTGTTGTTGCAGAAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGGCAACATCACATGTTGACCGAAGGCAAAATCTGCCCCCAACACAAAATGGCCACTATTTTGATCATAGTTTTTTTACTTCCATGGGCCATAATTCACGGAGCCTTCTGAAGAAGCCTTCTGAAAGGATGGCAGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCTGCTGCACTTGATGACACCAGCAGTAGGCAACAGGATGATAAAATCTCTCTCTCAAATCAGGGTGACGATGTGCCTGTGACCACTGATCAGCTGGATGTGACACTGGAATTCCCTAAAGACGAGAGTGACACCTTGATCTCATTTCCTTCTGTTATAAATTTATCCATACAAGGGACAGAGCCCCTACCATCGTTAATTATCCCAAATGGGGAAGATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCAGCCCGAGCTTGCAAGGAAGATAGTTGTGGATGGGCTTCATCAGTATTCCCAACAAATGATTCAAGATCCAGGCCAGGATCTAAGATACAAGCTTCAGGAAAGCACAAGTCTTCCATCTCTGACTCCATGAAGCCTTCTAAGTCGAAGTCAAAACGAAATTCAATGGATGCTAGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCATTGCCATCATTTCAAGCTAAGGATCTGAGAATCGATCTTAATTCATTAGCAATGGACGAAACAGTGACTGATGATGTGGATTGCAATCTGCCCTTTGTCCTAAATGAGGAAAATTCGTTGGAAACAGAGACTTTAGGTATGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAAGCCTTGATGATTGTACAGAATTGCCGGAATATACTGACATTGGATAA 6045 0.4167 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDPATRGEKKMKVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQSPEHHRSAQYKGVDEDVIDKYNEANAAEFQSDPIDNDEEYNVQSDDESEDDEQTLEEDEVLITEEERQEELAALHDEVDLPLEELLKRYSGEKGPVSEESSPDHSDDDNNVVRAGDENENGDNILSVSKLFSSNSSMVSGRRCDESNGGLTTPADNIAEEKTCQSENLAYDFSDEEEDGDFLLATEDNDDETTLSEEEKLEKMDAIDPKDEIALLQRESDMPVEELLAIGKDREDESEDAASLSEDLLDSSLHEDDRKKDSAVSVDEDVKPVEHMAFVQSQTEEQHWEAPHENPEGRDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLETMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVFSTSPFSSVDLRGFGFLFTHLDYSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSKDQRIFQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTTLQDLLTIRDPVYDIHQVKANPRSYMYSSKLADIVLSPVERFQRMVDVVESFMFAIPAARAPPPVCWCSRSEMPVFLHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRCLIQFDCGKLQELARLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPVKNMQKEKSQNIGDEVSVSNADVEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYVNEDDTKVDEPSELAESVSKSSKENALMLVGSDPKEERPLSVSIKEDDVDMLADVKQMAAAAAAAGQAISAFENHLRPIDRYAIHFLEVWDPIIDKAALESEVFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDTDFATEAYRQKVEALAQHQLMEELENEAKLKEEADEENCDPGKMMFYLCFGRIQTLRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQTDPMSIDDEIVTSLDLVSPNSTMQKKRKKPKFIADCKEKTLKKSKKTKRAADICASDSDNALLGFPDDRAESKQCESVVESEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNAWSKDGVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTGDNANHERGNNTASGKSLLKVTEDNIRMLLDVASEQENRELLLQKHFFALLSSVWKATSHVDRRQNLPPTQNGHYFDHSFFTSMGHNSRSLLKKPSERMAVTNLAQSRKLLAAALDDTSSRQQDDKISLSNQGDDVPVTTDQLDVTLEFPKDESDTLISFPSVINLSIQGTEPLPSLIIPNGEDHLRACGSVAEDRFREAARACKEDSCGWASSVFPTNDSRSRPGSKIQASGKHKSSISDSMKPSKSKSKRNSMDASEMRHQRVEPLFQSLPSFQAKDLRIDLNSLAMDETVTDDVDCNLPFVLNEENSLETETLGMVPHDFVAGLISSLDDCTELPEYTDIG 2014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0897 2014 MobiDBLite consensus disorder prediction 164 197 - -
Lele16g0897 2014 FunFam Photoperiod-independent early flowering 1 439 714 - -
Lele16g0897 2014 ProSiteProfiles HSA domain profile. 22 103 IPR014012 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 360 400 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 253 294 - -
Lele16g0897 2014 SMART bromneu2 23 94 IPR014012 -
Lele16g0897 2014 PANTHER HELICASE SRCAP-RELATED 15 1913 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 198 247 - -
Lele16g0897 2014 Pfam SNF2-related domain 487 758 IPR000330 GO:0005524|GO:0140658
Lele16g0897 2014 SMART helicmild6 1040 1123 IPR001650 -
Lele16g0897 2014 Coils Coil 1402 1428 - -
Lele16g0897 2014 Pfam Helicase conserved C-terminal domain 1011 1123 IPR001650 -
Lele16g0897 2014 Gene3D - 984 1230 IPR027417 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1885 1931 - -
Lele16g0897 2014 Coils Coil 1354 1374 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 380 400 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1910 1931 - -
Lele16g0897 2014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 1198 IPR027417 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1464 1483 - -
Lele16g0897 2014 Gene3D - 715 766 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1447 1463 - -
Lele16g0897 2014 Gene3D - 438 714 IPR038718 -
Lele16g0897 2014 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1014 1164 IPR001650 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1 33 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1553 1575 - -
Lele16g0897 2014 ProSiteProfiles Myb-like domain profile. 1610 1663 IPR001005 -
Lele16g0897 2014 Coils Coil 1228 1248 - -
Lele16g0897 2014 SMART ultradead3 465 658 IPR014001 -
Lele16g0897 2014 CDD DEXQc_SRCAP 469 691 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1446 1487 - -
Lele16g0897 2014 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 715 780 - -
Lele16g0897 2014 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 481 646 IPR014001 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 129 154 - -
Lele16g0897 2014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 691 IPR027417 -
Lele16g0897 2014 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 976 1230 - -
Lele16g0897 2014 Gene3D - 1606 1667 - -
Lele16g0897 2014 Pfam HSA domain 27 66 IPR014012 -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 127 294 - -
Lele16g0897 2014 FunFam Photoperiod independent early flowering protein 1606 1667 - -
Lele16g0897 2014 CDD SF2_C_SNF 1009 1134 - -
Lele16g0897 2014 MobiDBLite consensus disorder prediction 1885 1909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0897 Lele-ChrLele16 5044011 5055513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0897 489 761 RAD5 or RAD16-like Gene Family AT5G43530 29.193 2.09e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele16g0897 SNF2_N 9.8e-70 CL0023