Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0896 ATGGATGCCCGCAAGAGAGGGAGGGTTGAAGCTGGAGCCAACGTTAATGGCGGTTCCAAAAAGTTCAAGCAAGAAATGGACTCCTTATCATCTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACGGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCGGGTGGTTACAATGCTGTTGCCCACATGATGAATTTAACACCAGCTGTGCCTCCGGCATCTAGAAATATGGTTGCCCCAGCACCTGTCCCTAATGGGGCTGCACCACCGACTGTTAAAACCCGCATATGCAACAAGTATAGTACTGCTGAAGGCTGCAAGTTTGGTGACAAGTGTCACTTTGCCCATGGTGAATGGGAACTTGGTAAGGCTATTGCTCCTTCGGTGGATGATCATCGCACCATGGGATCTATTTCTGGCCGTTCAGCTGCTCGAGTGGAGCCTCCTCCAGGTCCTGTTGCGAGTTTTGGTGCCAATGCTACTGCTAAGATCAGTGTTGAAGCTTCATTAGCTGGAGCTATCATAGGAAAGGGTGGTGTGAACTCCAAGCAGATCTGCCGCCAAACGGGAGCCAAACTCTCAATTAGGGATCACGAGTCAGATCCGAATCTTAGGAACATCGAACTTGAAGGTAGTTTTGAGCAAATTAAGAATGCGAGCAACATGGTGAAAGAGTTGCTGGTGACATTATCGATGTCGGCGCCACCTAAAACTCATGGCGTTGCGGGAGCACCAGGCCCTCATGGAAGTAACTTTAAGACAAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCGCATGGGGCTGCAGAAGTACGTAAAGCTGGCGTATGA 882 0.4943 MDARKRGRVEAGANVNGGSKKFKQEMDSLSSAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAHMMNLTPAVPPASRNMVAPAPVPNGAAPPTVKTRICNKYSTAEGCKFGDKCHFAHGEWELGKAIAPSVDDHRTMGSISGRSAARVEPPPGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKNASNMVKELLVTLSMSAPPKTHGVAGAPGPHGSNFKTKLCENFAKGSCTFGERCHFAHGAAEVRKAGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0896 293 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Lele16g0896 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lele16g0896 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Lele16g0896 293 CDD KH-I 169 232 - -
Lele16g0896 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Lele16g0896 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Lele16g0896 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Lele16g0896 293 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Lele16g0896 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 158 IPR045877 GO:0003729
Lele16g0896 293 Pfam KH domain 170 233 IPR004088 GO:0003723
Lele16g0896 293 SUPERFAMILY CCCH zinc finger 258 289 IPR036855 GO:0046872
Lele16g0896 293 Gene3D - 95 132 - -
Lele16g0896 293 Gene3D - 259 291 - -
Lele16g0896 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lele16g0896 293 MobiDBLite consensus disorder prediction 1 21 - -
Lele16g0896 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Lele16g0896 293 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Lele16g0896 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lele16g0896 293 SMART kh_6 166 236 IPR004087 GO:0003676
Lele16g0896 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Lele16g0896 293 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Lele16g0896 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lele16g0896 293 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Lele16g0896 293 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0896 Lele-ChrLele16 5038524 5041751 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele16g0896 KH_1 2.2e-12 CL0007