Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g0889 | ATGCACACACACATGTCTGGATTGTTGCCCTCCCTATCAGAAATGTTTCTGGAGCCCTGTGGCAAGGTGTTTCTACATTGGCTTTTGTCGAGTGATGAGTTTCATCTCTCTTCTGAATGGTACGAGCTAGTCCGAAGTCTCCCAACTCGGCTGTTAAGTTTGAGTCCAACAGCTGGGTTTGCTGGAGCTGATGCTCCAAGGGCGGTATTCCCTAGCACTGTGGGTCGCCCTCGCCACACAGGTGTGATGGTTGGTATGGGACAGAAGGATGCGTATGTCGGCGATGAAGCTCAGTCAAAGAGAGGTATTCTGACTCTGAAATACCCTATCGAGCATGGAATTGTTAACAACTGGGACGATATGGAAAAGATCTGGCACCACACTTTCTACAATGAGCTCCATGTGGCTCCGGAAGAGCATCCAGTTCTCCTGACAGAAGCACCTCTCCACCCCAAGGCTAATCGTGAGAAAATGATTCAGATTATGTTCGAGACCTTTAACACTCCAGCCATGTACGTCGCTATCCAGGCCGTCCTTTCCCTTGACTCTAGTATTGTTATGGACTCTGGAGATGGTGTTAGCCACACGGTTCCCATCTATGAAGCCTATCCCCTCCCGCATGCAATCTTGCGTTTGTATCTTGCAGGGCGTGATCTCACTGATGCCTTGATGAAAATTTTGACTGAGCGTGGATACTCTTTCACCTCTAGTGCGGAGCGTGAAAATGTGACAGACGTGAAGGAAAAATTAGCCTATATTGCGCTTGATTATGAACAAGAGCTGGATACTTCAAAGACCAGCTCATCTGTTGAGAAGAGCTATGAGCTCCCTGATGGGCAGGTGATCACAATAGGTGCTGAAAGATTCCGCTTCCCTGAAGTGATCTTCCAACCATCCATGATTGGGATGGAAGCTGCTGGCATACACGAAACGTCATATAACTCAATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTACGGTAACGTTGTCTTGAGTGGTGGTTCCACAATGTTCCCAGGCATTGCTGATAGAATGAGTAAGGAGATTACAGCTTTGGCACCCAGTAGCATGAAAATCAAGGTGGTTGCACCACCAGAGAGGAAGTATAGCGTATGGATTGGAGGATCCATTTTGGCATCTCTTAGCACCTTCCAAGAGATGTGGATTGCAAAGGCTGAGTACGATGCATCCGGGCCATCAATTGTTCACAGGAAGTGCTTCTAA | 1230 | 0.4764 | MHTHMSGLLPSLSEMFLEPCGKVFLHWLLSSDEFHLSSEWYELVRSLPTRLLSLSPTAGFAGADAPRAVFPSTVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELHVAPEEHPVLLTEAPLHPKANREKMIQIMFETFNTPAMYVAIQAVLSLDSSIVMDSGDGVSHTVPIYEAYPLPHAILRLYLAGRDLTDALMKILTERGYSFTSSAERENVTDVKEKLAYIALDYEQELDTSKTSSSVEKSYELPDGQVITIGAERFRFPEVIFQPSMIGMEAAGIHETSYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQEMWIAKAEYDASGPSIVHRKCF | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g0889 | 409 | Gene3D | - | 177 | 372 | - | - | |
| Lele16g0889 | 409 | SMART | actin_3 | 58 | 409 | IPR004000 | - | |
| Lele16g0889 | 409 | SUPERFAMILY | Actin-like ATPase domain | 58 | 182 | IPR043129 | - | |
| Lele16g0889 | 409 | Gene3D | Actin; Chain A, domain 4 | 214 | 305 | - | - | |
| Lele16g0889 | 409 | Gene3D | - | 58 | 403 | - | - | |
| Lele16g0889 | 409 | FunFam | Actin, alpha skeletal muscle | 73 | 110 | - | - | |
| Lele16g0889 | 409 | Pfam | Actin | 58 | 409 | IPR004000 | - | |
| Lele16g0889 | 409 | FunFam | Actin, muscle | 214 | 305 | - | - | |
| Lele16g0889 | 409 | PANTHER | ACTIN | 58 | 402 | IPR004000 | - | |
| Lele16g0889 | 409 | FunFam | Actin, alpha skeletal muscle | 52 | 191 | - | - | |
| Lele16g0889 | 409 | CDD | NBD_sugar-kinase_HSP70_actin | 113 | 215 | - | - | |
| Lele16g0889 | 409 | FunFam | Major actin | 286 | 372 | - | - | |
| Lele16g0889 | 409 | ProSitePatterns | Actins signature 1. | 92 | 102 | IPR004001 | - | |
| Lele16g0889 | 409 | SUPERFAMILY | Actin-like ATPase domain | 183 | 409 | IPR043129 | - | |
| Lele16g0889 | 409 | PRINTS | Actin signature | 154 | 167 | IPR004000 | - | |
| Lele16g0889 | 409 | PRINTS | Actin signature | 270 | 286 | IPR004000 | - | |
| Lele16g0889 | 409 | PRINTS | Actin signature | 88 | 99 | IPR004000 | - | |
| Lele16g0889 | 409 | PRINTS | Actin signature | 65 | 74 | IPR004000 | - | |
| Lele16g0889 | 409 | PRINTS | Actin signature | 100 | 122 | IPR004000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g0889 | Lele-ChrLele16 | 5016167 | 5018924 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele16g0889 | 58 | 409 | Cytoskeleton Gene Families | AT3G12110 | 90.196 | 0.0 | 667 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele13g1555 | 13 | 24677425 | 24679697 | Lele16g0889 | 16 | 5016167 | 5018924 | hybridization | |
| Lele14g1475 | 14 | 23059424 | 23061669 | Lele16g0889 | 16 | 5016167 | 5018924 | hybridization |