Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0881 ATGGAAGTTAATCAAAGCCGTCCTTCCATTCCATCAATTAGACTGGGCTCGTTTTCTTCGATCGTGTGTTATCCCCTTTTCTTCCTGGCCTTGGATTGTCAAAATTCTCTAATTCTTTTTCCTGTCTTGGACATCCACCTCGTGATGGGAGAACAGACACCTGATGCGATGAACCTTGATTTGAATTTGGGTCCCATTCCGGAGCCACCGGCCGATTCCATAGCCAGCGAACATGCGGTCTTAGTAGATGACTGGACCGAGCAACCTCTTCGCCGAGTTAGTGACGCTCATCGGTATAGGTCTCGACTACAATGGAGATCGCATAATCTTCTTGTCCCACCCGATGCCCAGCGGCATGTCAACCCGCCGCCCGAATCCCAAAATATTCCGATTGAATTAAATCAATTTGTGGAGACCCCTGCCCTTGGGACTGCTCGGCAGGATGGTCGGGACAGTGTTGCAGCTGACCTAAGATCAGGGGAGGTACCAAAAGCATGTGAAAATAACAGCTTGACAAGGGATGAGGAATCCGAGAAGAAGGATGATGTTGAGAAGGGTATTGGCAACGATGGGAGCTTTTTCGATTGTAATATCTGTTTGGACCAGGCCAAGGACCCTGTTGTGACTTGCTGTGGCCATTTGTTTTGTTGGCCTTGCCTCTATCGATGGCTACATATGCATTCAGAAGCCAAGGAATGTCCTGTTTGTAAGGGCGAGGTGTCATACAAGAATATTACCCCAATATATGGTCGTGGAAGCAACAATGTTCAAGATCCTGAGGAAGATCCCGCTCTTAAAGTCCCTCTCAGGCCCCATGGAAAGCGTGTTGAGAGTTTAACACCAACCTTTCAGAGAAGTGCATCGGGAAATCCTATGGAGGAGATGATTAGGCGTCTCGGAGGAAGAGTTGATCTTGCTCGGGGTCTGGTTCGCCCGCATGATACTGAAACCGTGCGTGAAACAGCAGAGAGAACAAGCTTCTTGCTCAACAGGTTTTTGACGTCTCGAGCAATTCGGAGAGAACAAAATCCCGAGGCGTCCCCAGATGATGCAGGATATTTGGCGGGAAACAATATGAGCAATCTTGACGCAGGGGATAATGGCAGGCTGCAATCTCTCCTGCTTCGAAGAACACATTCACACAGAGCAACACTTTCATCTTTTTCCTCAGCTTTAAGCTCTGCGGAGCGAGTGGTGGAGACATATTTCCGGAACCGTGCAGGAGCTAGAAACCAAGAACAAGCTCCACCGGTGGATGATAGAGATTCATATTCAAGCATTGCTGCTGATATAAATTCGGAGAGTCAGGTGGACAGTACTGCCGTAGAAATTGATTCCATGGTATCGTTGTCCACGTCCTCTTCCAGAAGGAGAAACGATTCTTCTAGAGTTTCTGATGTAGATACTGGAGACTCTCGCGCTCCTAGGCCTAGGCGAAGACCTTATTTGTTTTTGGATGCTAATCATCGTGTCAATGCTGTGAAGATGTATAAGCCAATGGACTCCACGCTTCTCACTCAAGTTTTCCCTTACGGGGTTAATCCAGTTTTGAGATTAGAATTTAGATGTGACCGGGGCATGTTTAGGAAGCTAAGCAGTTCAGGGGGAGAAAGTGAAGGTGTGGGTCATTCCCATTTACGGAATTTGGGTTTTTACAATGCTATAGCCATTGCGATACGACACATTCAATTACTCGTCTTGGAAAAGGAAAACAGTTTTATGATGGCAGTTGCATCTGGGTGGCGGGATGAGCTCATAGGTAGACCAGGCTTGAGCAGTCTCACATCATTACTCAGCTGA 1800 0.4744 MEVNQSRPSIPSIRLGSFSSIVCYPLFFLALDCQNSLILFPVLDIHLVMGEQTPDAMNLDLNLGPIPEPPADSIASEHAVLVDDWTEQPLRRVSDAHRYRSRLQWRSHNLLVPPDAQRHVNPPPESQNIPIELNQFVETPALGTARQDGRDSVAADLRSGEVPKACENNSLTRDEESEKKDDVEKGIGNDGSFFDCNICLDQAKDPVVTCCGHLFCWPCLYRWLHMHSEAKECPVCKGEVSYKNITPIYGRGSNNVQDPEEDPALKVPLRPHGKRVESLTPTFQRSASGNPMEEMIRRLGGRVDLARGLVRPHDTETVRETAERTSFLLNRFLTSRAIRREQNPEASPDDAGYLAGNNMSNLDAGDNGRLQSLLLRRTHSHRATLSSFSSALSSAERVVETYFRNRAGARNQEQAPPVDDRDSYSSIAADINSESQVDSTAVEIDSMVSLSTSSSRRRNDSSRVSDVDTGDSRAPRPRRRPYLFLDANHRVNAVKMYKPMDSTLLTQVFPYGVNPVLRLEFRCDRGMFRKLSSSGGESEGVGHSHLRNLGFYNAIAIAIRHIQLLVLEKENSFMMAVASGWRDELIGRPGLSSLTSLLS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0881 599 Pfam Zinc finger, C3HC4 type (RING finger) 196 236 - -
Lele16g0881 599 SMART ring_2 196 236 IPR001841 -
Lele16g0881 599 MobiDBLite consensus disorder prediction 168 184 - -
Lele16g0881 599 FunFam Zinc finger family protein 177 250 - -
Lele16g0881 599 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Lele16g0881 599 MobiDBLite consensus disorder prediction 459 481 - -
Lele16g0881 599 CDD RING-HC_AtRMA_like 194 238 - -
Lele16g0881 599 SUPERFAMILY RING/U-box 192 249 - -
Lele16g0881 599 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 172 376 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele16g0881 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 258 IPR013083 -
Lele16g0881 599 MobiDBLite consensus disorder prediction 448 481 - -
Lele16g0881 599 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Lele16g0881 599 MobiDBLite consensus disorder prediction 164 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0881 Lele-ChrLele16 4966179 4972309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0881 49 472 C3H Transcription Factor Family AT3G58030 50.450 4.21e-108 330