Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0880 ATGGAGCTGGCTCTGAGCTTGGGAGGCGCACCAAAGGGCTTCCCCATACTGGACAAGGCCCCGAGAATGCCCAATAAGGAAGCTGGTTTCTGCATAGCACTCGGCCGAGGTCTCTCTGAGAATGCTTCAGAGCAGAATAGGGCAAGTCCCACACAAGTCGAAGATGAGACCAGAGCCTCAGATCCGACTCTTCAGTTAGACCTTCTTCCCTTCACGCCTGTTCCTCGACCCCACCCAGCTCCCCATCTTCGGATTCCTTGGCTCTCCGATTCTTTGGGATCTCAACGTTTCTCGCCGGATGGAGGATCGAAGGCGTTGGACGTCAACCGTTTGCTGGCTGCAGGAGCGGAGGAGGCGGAAGACGGTACTCCACTGTCGTCGTCTCCTAACAGCGTGTCGTCATTTCACATGGACTTCTACTTAAGGAGTGGTAATGCGGGCAGTAAAAGCAAGAGAGAGCTTGAGGGTGAAGGTGAGCGAGTTAGTTCTAGGGCTAGCGACGATGATGAAAACGGGTTGACTCGCAAGAAACTCAGGCTCTCCAAGGAACAGTCGGCTTTTCTTGAAGAAAGCTTCAAAGAACACACTACCCTTAATCCCAAGCAGAAACTGATTCTGGCGAAACAGTTAAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGCGAGTATCTGAAGAGATGCTGCGAGACGCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTAAGGGCATTAAAGACGTCCCGGCCATTTTACATGCAGCTTCCAGCTACCACTCTTACAATGTGTCCTTCCTGCGAAAGGGTGGCCACCAACTCATCATCGTCTGCCTCCGCATTAACCACCGTCACGATCCCCAACAACGCTTCTCAGGCATCGCCACTCATGTCTCTCAGCAACCCCAGAACGGTCCATCCTCATCGCACTCCTTCATCATGA 996 0.5191 MELALSLGGAPKGFPILDKAPRMPNKEAGFCIALGRGLSENASEQNRASPTQVEDETRASDPTLQLDLLPFTPVPRPHPAPHLRIPWLSDSLGSQRFSPDGGSKALDVNRLLAAGAEEAEDGTPLSSSPNSVSSFHMDFYLRSGNAGSKSKRELEGEGERVSSRASDDDENGLTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLILAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSRPFYMQLPATTLTMCPSCERVATNSSSSASALTTVTIPNNASQASPLMSLSNPRTVHPHRTPSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0880 331 Gene3D - 179 229 - -
Lele16g0880 331 MobiDBLite consensus disorder prediction 40 59 - -
Lele16g0880 331 MobiDBLite consensus disorder prediction 148 176 - -
Lele16g0880 331 MobiDBLite consensus disorder prediction 146 176 - -
Lele16g0880 331 Pfam Homeodomain 175 229 IPR001356 GO:0003677
Lele16g0880 331 ProSitePatterns 'Homeobox' domain signature. 206 229 IPR017970 GO:0000981|GO:0006355
Lele16g0880 331 FunFam Homeobox-leucine zipper protein HAT22 179 225 - -
Lele16g0880 331 SUPERFAMILY Homeodomain-like 168 232 IPR009057 -
Lele16g0880 331 MobiDBLite consensus disorder prediction 40 60 - -
Lele16g0880 331 Pfam Homeobox associated leucine zipper 231 265 IPR003106 GO:0006355|GO:0043565
Lele16g0880 331 MobiDBLite consensus disorder prediction 309 331 - -
Lele16g0880 331 ProSiteProfiles 'Homeobox' domain profile. 171 231 IPR001356 GO:0003677
Lele16g0880 331 SMART halz 231 274 IPR003106 GO:0006355|GO:0043565
Lele16g0880 331 Coils Coil 237 267 - -
Lele16g0880 331 CDD homeodomain 175 232 IPR001356 GO:0003677
Lele16g0880 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 303 - -
Lele16g0880 331 SMART HOX_1 173 235 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0880 Lele-ChrLele16 4960069 4961370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0880 161 331 Homeobox Transcription Factor Family AT4G37790 63.793 7.44e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele16g0880 Homeodomain 8.9e-15 CL0123