Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0871 ATGGACAAAGCTTCAGAGACTAGCAGTAGAGAGACCCATGACTTCATGAACGTCGATTCCTTCTCTCAGCTACCCTTCATACGTCCTGCCCCTCTTAAAGAAAAGCCCATCAAGCTCTTCGGCATAGAATTCGGTTCCCCTGAAGCAACCGCCACCGGGCCACCGGCTGACGATTCTGAATCCGTCGAAGATTCGAATGGGAAGGACAACACCACCACCGAGACCAGCGAGACTAACCGGAGATTTGAATGCCATTACTGCTGCAGAAACTTCCCGACTTCCCAAGCCTTAGGTGGCCACCAAAACGCTCACAAACGAGAGCGGCAGCACGCCAAACGAGCACACCTTCACATGTCTGAAGCTCAAGTTTACAACCTTGCGAACTACAGATCCTTCACTTCACCGACTTCAACGTTAACCCCGCCAATGCCTGCTTCTACTTATCCAACTTCTGCTGCTTATAATAGTGGTGCTAGGTTTTATGGAAGCCCATATTCTCATCACCATCATCATCAACAACATCCCATCAATGGAAGCCCCTTGGCCTTGTGGCGAATCCCTACCCTCCCAACTAACCCTACTTCCAATCTTGACCGTTCGTTGAATCCATTGCCCTCGTTTGCCGGCGAGGATATCAACATGAGGGCCTCATCGCTACCGCAGCTTGGCGGGTCTGCTTCACCGCTGCAAAACTGGTACGTCGTCCATGACTCCAAACCCTGCGTTCAAGACCATGTGAGTTTGGATCTTCATCTGTAA 759 0.5086 MDKASETSSRETHDFMNVDSFSQLPFIRPAPLKEKPIKLFGIEFGSPEATATGPPADDSESVEDSNGKDNTTTETSETNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLHMSEAQVYNLANYRSFTSPTSTLTPPMPASTYPTSAAYNSGARFYGSPYSHHHHHQQHPINGSPLALWRIPTLPTNPTSNLDRSLNPLPSFAGEDINMRASSLPQLGGSASPLQNWYVVHDSKPCVQDHVSLDLHL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0871 252 Pfam C2H2-type zinc finger 81 106 - -
Lele16g0871 252 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lele16g0871 252 Gene3D Classic Zinc Finger 61 134 - -
Lele16g0871 252 PANTHER ZINC FINGER PROTEIN GIS 1 252 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Lele16g0871 252 SUPERFAMILY beta-beta-alpha zinc fingers 79 110 IPR036236 -
Lele16g0871 252 MobiDBLite consensus disorder prediction 1 25 - -
Lele16g0871 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lele16g0871 252 MobiDBLite consensus disorder prediction 44 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0871 Lele-ChrLele16 4909558 4910316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0871 1 252 C2H2 Transcription Factor Family AT3G58070 39.114 1.16e-40 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0951 05 5885509 5886288 Lele16g0871 16 4909558 4910316 CCT
Lele13g1571 13 24773739 24774470 Lele16g0871 16 4909558 4910316 hybridization
Lele14g1494 14 23164763 23165521 Lele16g0871 16 4909558 4910316 hybridization