Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0859 ATGGCTTCTAGATTCTGGACACAGGGTGCCAGTGACTCCGAGGAGGAGGAGAGTGACTATGATGAAGATGTTGAGAATGCAGTTGGTGAATCTACCAACCAAGCTGTTAAGAGCAGATACTTGCAGGGTAATGCTAGTGATAGTGATGATTCTGATGATCAGAAGCGTGTTGTTAGGTCAGCAAAAGACAAGCGATTTGAAGAGATGTCATCTACAATTGGCCAAATGAAGAATGCTATGAATATTAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATAAACAAGCAACTTGAGAAAGTCATGCGTGTCACTGAATCTGAGAAAGTCCCTACGCTTTACATAAAGGCACTCGTGATGTTGGAAGATTTCCTGGCACAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGCAGTAATGCTAAAGCATTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGATTTGATTACTAAATATAGAGAAAATCCTGAGAGTGAGGAGGACAATGAAGAGGAGACTGAGGATGAGGATGAAAGTGAGGAGGAGGTAATTGAGGAGATTGATAAGATACAAAAGTCTGATTCTGAAGATGGTGATCAAGATGATGAGAAGTCAGATGCAATTGATACCCCTTGGGACCAAAAACTTAGCAAGAAAGACAGGCTTATGGATAGGCAATTTATGAAAGACCCTAGTGAGATCTCATGGGACATGGTTAACAAGAAGTTCAAAGAGGTTGTGGCAGCTAGGGGCAGGAGGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCCAAAACTCCTGCTCAGAAGCTGGAAATATTTTTCAATGTTGTTTCTGCTCAATTTGATGTTAATCCTGGTTTAAATGGGCACATGCCTATTAGTGTGTGGAAGAAATGCGTGCAGAATATGCTGCTCATTCTTGATATTCTTGTGCAGTACCCCAACATAATTGTTGATGATACAGTGGAGCCTGATGAGAACGAAACTCAGAAGGGTGCTGACCATAGTGGACCAATTCGGGTATGGGGCAACTTAGTTGCATTCCTAGAAAGAATTGATGCTGAGTTTTTCAAGAGCTTGCAATGCATTGATCCTCATACTCGTGAGTATGTTGAGAGACTTAGGGATGAGCCAATGTTTCTGGCTCTTGCTCAGAATGTCCAGGATTATCTTGAAAGGGCTGGAGATTTCAAAGCTTCATCAAAGGTAGCCCTTAGACGTGTTGAACTCATCTATTATAAACCACAGGAGGTTTATGATGCCATGAGGAAATTGGCTGAACTGACAGATGACAATAATGGAGAGGTGGATGACGAGTCTAAAGGGTTTGAGGATACAAGGACTCGTACTGCATTTGTTGTAACTCCTGAGCTTGTTCCTCGAAAACCTACCTTTCCAGAGAATAGTAGGACACTAATGGACTTATTGGTGTCCCTAATATACAAGTATGGGGATGAGCGGACAAAGGCACGGGCTATGCTTTGTGATATATATCACCATGCTCTTCTGGATGAGTTCTCAACTGCTCGTGATCTTCTGCTTATGAGCCATTTGCAGGATAGTGTACAGCATATGGACATATCAACACAGATACTTTTTAACAGGGCTATGTCACAGCTAGGTCTTTGTGCTTTTCGGGTTGGACTGATTTCTGAGGCTCATGGCTGTCTCTCTGAATTATATTCTGGTGGAAGGGTGAAGGAACTGCTTGCTCAAGGTGTCTCACAAAGTCGCTATCATGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGGAGACGCCAGATGCCATATCATATGCACATTAACCTTGAGCTCCTGGAGTCAGTGCATCTTATATGTGCTATGCTTCTGGAAGTGCCTAACATTGCAGCTAATGACCATGATGCAAAGCGCAAAGTTATTAGTAAGAATTTCCGTCGTTTGCTTGAGGTCAGTGAGAAGCAAACATTTACAGGTCCACCTGAAAATGTCAGAGATCATGTCATGGCTGCTACAAGGGCCCTGAGCAAGGGGGATTTCCATAAGAGTTATGATATCATCAAGTCGCTGGATGTCTGGAAATTTGTTAGAAATCATGTTAAGGTGCTGGAAATGCTCAAGGAAAAAATCAAGGAAGAGGCACTAAGGACTTACCTCTTCACCTTTTCTTCATCCTATGACTCTTTGAGCCTTGAGCAACTCACAAAAATGTTTGACCTCTCTGTTCCTCACACACATAGCATAGTTAGTAGGATGATGATAAATGAGGAGCTGCATGCAAGCTGGGATCAACCAACTGGCTGCATTATTTTCCAGGATGTAAAGCACTCTAGATTGCAGGCTTTGGCATTCCAGTTGACAGAGAAGTTATCTATCCTTGCGGAGAGTAATGAAAGAGCAATAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTTCCCCTAAGGCGGCGAGATGGCCAGGACTATGCTGCTGCTGCCGCAGCACCAACTACTGTTGGTGGTAGGTGGCAAGACTTGTCAGTTGGTCAGACAAGGCAAGGCAGTGGTACTGGACGTGCAGGATATAGTATGGGTGGTGGAAGGCCATTAACATTGAGCCAAAATGTCTATTCAAGGGACCGAACAGGAAGAGGAGCAGGTGGAGGCTATCAGAGTACGAGATATCAAGACTCTGCATATGGTGGTTCGGGGAGGTCAACTCACGGTTTAGCACTCAGGGGAGCCCATGTGGATGCATCTACTCGCATGGTTAGCCTTAAAGGTGTTCGTGCTTGA 2805 0.4381 MASRFWTQGASDSEEEESDYDEDVENAVGESTNQAVKSRYLQGNASDSDDSDDQKRVVRSAKDKRFEEMSSTIGQMKNAMNINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLITKYRENPESEEDNEEETEDEDESEEEVIEEIDKIQKSDSEDGDQDDEKSDAIDTPWDQKLSKKDRLMDRQFMKDPSEISWDMVNKKFKEVVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEIFFNVVSAQFDVNPGLNGHMPISVWKKCVQNMLLILDILVQYPNIIVDDTVEPDENETQKGADHSGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLALAQNVQDYLERAGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTDDNNGEVDDESKGFEDTRTRTAFVVTPELVPRKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNIAANDHDAKRKVISKNFRRLLEVSEKQTFTGPPENVRDHVMAATRALSKGDFHKSYDIIKSLDVWKFVRNHVKVLEMLKEKIKEEALRTYLFTFSSSYDSLSLEQLTKMFDLSVPHTHSIVSRMMINEELHASWDQPTGCIIFQDVKHSRLQALAFQLTEKLSILAESNERAIEARIGGGGLDLPLRRRDGQDYAAAAAAPTTVGGRWQDLSVGQTRQGSGTGRAGYSMGGGRPLTLSQNVYSRDRTGRGAGGGYQSTRYQDSAYGGSGRSTHGLALRGAHVDASTRMVSLKGVRA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0859 934 MobiDBLite consensus disorder prediction 167 224 - -
Lele16g0859 934 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 646 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele16g0859 934 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 929 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele16g0859 934 MobiDBLite consensus disorder prediction 27 45 - -
Lele16g0859 934 MobiDBLite consensus disorder prediction 12 26 - -
Lele16g0859 934 SUPERFAMILY "Winged helix" DNA-binding domain 713 786 IPR036390 -
Lele16g0859 934 MobiDBLite consensus disorder prediction 892 906 - -
Lele16g0859 934 MobiDBLite consensus disorder prediction 135 153 - -
Lele16g0859 934 Pfam PCI domain 654 782 IPR000717 -
Lele16g0859 934 MobiDBLite consensus disorder prediction 883 906 - -
Lele16g0859 934 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 715 803 - -
Lele16g0859 934 ProSiteProfiles PCI domain profile. 614 786 IPR000717 -
Lele16g0859 934 Gene3D - 718 790 IPR036388 -
Lele16g0859 934 MobiDBLite consensus disorder prediction 46 70 - -
Lele16g0859 934 MobiDBLite consensus disorder prediction 134 153 - -
Lele16g0859 934 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 857 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele16g0859 934 SMART PINT_4 715 803 IPR000717 -
Lele16g0859 934 MobiDBLite consensus disorder prediction 174 193 - -
Lele16g0859 934 MobiDBLite consensus disorder prediction 1 70 - -
Lele16g0859 934 Coils Coil 144 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0859 Lele-ChrLele16 4818715 4822457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0859 1 934 Eukaryotic Initiation Factors Gene Family AT3G56150 67.800 0.0 1207