Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0858 ATGTCACTCTGTTCATCCCCAACCCGTACCCCCTTTCCTTTTGTAACGGGTGTTTGTGTGAACAGGATGGAGAATCAGGCGAAGCATGTTGTGGTTGTTAAAGTCATTGGACGCACTGGATCCAGGGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGACGATCATAACCGTTATATCATGAGGAATGTTAAAGGACCCGTGAGAGAAGGAGACATTCTTACCTTGCTCGAGTCTGAAAGAGAAGCTAGAAGACTTCGCTAG 264 0.4621 MSLCSSPTRTPFPFVTGVCVNRMENQAKHVVVVKVIGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0858 87 ProSitePatterns Ribosomal protein S28e signature. 78 86 IPR028626 -
Lele16g0858 87 Pfam Ribosomal protein S28e 26 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele16g0858 87 PANTHER 40S RIBOSOMAL PROTEIN S28 23 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele16g0858 87 Hamap 30S ribosomal protein S28e [rps28e]. 23 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele16g0858 87 CDD S1_S28E 28 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele16g0858 87 FunFam 40S ribosomal protein S28 20 87 - -
Lele16g0858 87 Gene3D - 20 87 IPR012340 -
Lele16g0858 87 SUPERFAMILY Nucleic acid-binding proteins 23 87 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0858 Lele-ChrLele16 4810235 4810498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0858 23 87 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 5.13e-34 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1509 14 23261400 23261766 Lele16g0858 16 4810235 4810498 hybridization