Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0849 ATGCTTAGCTTGAATGGCTTCTTGTCCCGTACAAGAAGGATCAAGAAAAAGAACAGAAACAAACTCAAACTCAAACTCAAAAGCCAATTCGCTTTCCATAAGCGAAAGTGCATTTCCCATGAGAATGAATTGCTAGACCGAGATGAATTGACAGGAGATAGTCAAGATACTGAAGGTTTCAGGCTCAAAACCTATGCTCCATCACACACTTATTGGGTTCAACCTTTGGGAAATCTTTATTTCAACCCACGTTCTATCAACTGCAGAGCTACAGGTTTAGGTAATCTGCACACTCTGACAGACGAGCTTGTTCTTGAAATTCTGGGGTTGTTGAGTGGGAAAGATTTGGGGGTTTTAGCTACTGTTAGCAAATCGTTTTATGTTTTCACCAATCATGAACCCATTTGGAGGAATCTTGTATTGGAAAATCTCAATGGTGGCTTTCGGTACAATGGGTCTTGGAAATCTACTTATATTGGTTCTCACCACCCTTCATTTGACGTATCAAATATTGCGATTCAGAATTTCGAAGTGAGAGACTTTTATTCTGATTATCTCTTTCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACCAGAATGGCTGGTAAGAGATAATATAGTTCGGAAAAGGGGCATTTCGGTTGAAGAATTCGTCAAGAATTTTGAGGAGCCTAATAAGCCGGTCTTGTTGGAAGGATGTCTTGATAATTGGGATGCACTGAAAAAATGGGATAGAGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTAGACATGAGGCTTGAAGACTATTTTGAGTATTCAGATCAAGTGAGAGAAGAAAGACCATTGTACCTGTTTGATCCAAAGTTTGCTGAAAAAGTTCCAGATTTGGATTCCCAATTTGACGTTCCGGCTTACTTCCAAGAGGACTTGTTTAGTGTCTTGGGCAAAGAGAGACCAGACTACAGGTGGATTATTGTTGGTCCCACTGGATCAGGATCATCTTTCCATGTTGATCCAAATTCGACTTCAGCTTGGAATGCTGTGATCAAGGGCTCCAAGAAGTGGATATTATTTCCTCCTGATGTGATTCCACCCGGAGTTCATCCTAGTCCTGATGGTGCAGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTTATGAACTTTTATGGCGCGACAAAAAGTTGGAAAAAGAAGCCTGTTGAGTGCATCTGTAAAGCTGGGGAGGTTGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCTATAACCCAAAATTATGTCAGTAGGAGAAACTTTCTTAATGTCTTGGATTTTCTTAAAAGGCCGAATGCAAGCGTGCTAGTATCTGGAACAAGAGATCGAGTGAATTTGTATGATAAGTTTAGAGATGCTATAGAGGATTCTTTTCCTGGAATAATTGATGAGTTGACTCGGAAAGAGGAAGAGAAACAGATTCAGCAGAAGAAACGTTCTTTCTGGGATTCTGTTACTGATTCTAAAGCGGGAGCTTTTAAATTCTCTTTCTAG 1554 0.4041 MLSLNGFLSRTRRIKKKNRNKLKLKLKSQFAFHKRKCISHENELLDRDELTGDSQDTEGFRLKTYAPSHTYWVQPLGNLYFNPRSINCRATGLGNLHTLTDELVLEILGLLSGKDLGVLATVSKSFYVFTNHEPIWRNLVLENLNGGFRYNGSWKSTYIGSHHPSFDVSNIAIQNFEVRDFYSDYLFQSWLCANLEMKPEWLVRDNIVRKRGISVEEFVKNFEEPNKPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVDMRLEDYFEYSDQVREERPLYLFDPKFAEKVPDLDSQFDVPAYFQEDLFSVLGKERPDYRWIIVGPTGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKSWKKKPVECICKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNFLNVLDFLKRPNASVLVSGTRDRVNLYDKFRDAIEDSFPGIIDELTRKEEEKQIQQKKRSFWDSVTDSKAGAFKFSF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0849 517 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 93 515 - -
Lele16g0849 517 SUPERFAMILY Clavaminate synthase-like 207 450 - -
Lele16g0849 517 Gene3D - 91 165 - -
Lele16g0849 517 ProSiteProfiles JmjC domain profile. 292 452 IPR003347 -
Lele16g0849 517 ProSiteProfiles F-box domain profile. 93 139 IPR001810 GO:0005515
Lele16g0849 517 SMART fbox_2 99 139 IPR001810 GO:0005515
Lele16g0849 517 Pfam Cupin-like domain 216 435 IPR041667 -
Lele16g0849 517 Gene3D Cupin 185 437 - -
Lele16g0849 517 FunFam F-box protein At1g78280 187 437 - -
Lele16g0849 517 SUPERFAMILY F-box domain 90 162 IPR036047 GO:0005515
Lele16g0849 517 SMART cupin_9 283 452 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0849 Lele-ChrLele16 4755629 4757773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0849 89 441 Glycosyltransferase AT1G78280 39.835 7.26e-80 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele16g0849 Cupin_8 1.1e-24 CL0029