Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0836 ATGAGCAACAACGGCACAGATGATTCTTCTGGATTCCTAGGATCCAACAACATTAGTGGACTCGGGTATGGCATAGGAATATCGAGTGGGATTTTGCTGCTCGTCACGACCATCACCCTCACTTCCTATTTCTGCACCAGAACACAGTCACCGCCATCTTCTCCCTCCGCCATCTCGGCTGCTCGGAGAAATCTCCCCACATTCTTTGAGCCGCATCACACGGTTGTGGATGTGGGGATTGACGAAGCCACCATTCTGAGCTACCCCAAGCTGCTTTATTCCGAGGCAAAGCTCAAAAAGCCAGATTCCACAGGAACATGTTGTTCCATATGCCTAGGAGATTATAAAAGCAGGGATACGCTTCGGGAGCTACCGGATTGTGGCCATATATTCCACCTTAAGTGCATTGATCCATGGCTCAGAATGCATCCGACGTGTCCTCTCTGTAGAACATCTCCTGTCCCAACACCACTTGCGACACCTCTCGCCGAGGTGGTTCCATTGACCGCCATGCGGGTACCATAA 525 0.5086 MSNNGTDDSSGFLGSNNISGLGYGIGISSGILLLVTTITLTSYFCTRTQSPPSSPSAISAARRNLPTFFEPHHTVVDVGIDEATILSYPKLLYSEAKLKKPDSTGTCCSICLGDYKSRDTLRELPDCGHIFHLKCIDPWLRMHPTCPLCRTSPVPTPLATPLAEVVPLTAMRVP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0836 174 CDD RING-H2_PA-TM-RING 107 150 - -
Lele16g0836 174 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 164 IPR045899 -
Lele16g0836 174 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lele16g0836 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
Lele16g0836 174 Pfam Ring finger domain 108 150 IPR001841 -
Lele16g0836 174 SMART ring_2 108 149 IPR001841 -
Lele16g0836 174 SUPERFAMILY RING/U-box 107 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0836 Lele-ChrLele16 4678124 4678648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0836 8 170 C3H Transcription Factor Family AT2G35910 58.896 6.61e-55 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1533 14 23392937 23393461 Lele16g0836 16 4678124 4678648 hybridization