Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0834 ATGTATCCGTCTTTGACGAGTCAGGGCCGTTTACTGCTGCCACTTAACTTGACATCCGATGATGGGCCAATTTATGTAAATGCTAAGCAGTATCATGGGATCATCAGACGTCGGCAGTCACGTGCAAAGGCTTTACTTGAGAATAAATTCACAAAACGACGCAGGCCCTACATGCATGAATCACGTCACCTGCATGCGATAAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGAAATCTGATGCATGGGAATGTTGAAAGCGGAAGCGCAGTGATCAAAACTGGGGAGGGTCTGTTCCAGTCTAGTGGTTCTCAGAGTTCTGAAGTTCTGCAATCAGAGGGTAATGGAACTCTGAATTCATCAAAGGAAACCAATGGCAGCAGTTCAAATGTTTCAGGGTTCGATGTGACTAGCATGTATGCCGCAAGTGGAACTTTCGATAGCTTTGGTCTCAATCATGTGGGGCCCTCTGTGCACTCTCTTGCAGACATGATAGATCATAGTGGACTTGGCATTACCATGCCTGCGAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAAATCTAA 576 0.4705 MYPSLTSQGRLLLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKALLENKFTKRRRPYMHESRHLHAIRRPRGCGGRFLNTRNLMHGNVESGSAVIKTGEGLFQSSGSQSSEVLQSEGNGTLNSSKETNGSSSNVSGFDVTSMYAASGTFDSFGLNHVGPSVHSLADMIDHSGLGITMPAKWVAAAGNCCKI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0834 191 PRINTS CCAAT-binding transcription factor subunit B signature 54 77 IPR001289 GO:0003700|GO:0006355
Lele16g0834 191 PRINTS CCAAT-binding transcription factor subunit B signature 23 45 IPR001289 GO:0003700|GO:0006355
Lele16g0834 191 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 141 IPR001289 GO:0003700|GO:0006355
Lele16g0834 191 Gene3D - 21 81 - -
Lele16g0834 191 ProSiteProfiles NF-YA/HAP2 family profile. 20 80 IPR001289 GO:0003700|GO:0006355
Lele16g0834 191 SMART cbf3 19 80 IPR001289 GO:0003700|GO:0006355
Lele16g0834 191 MobiDBLite consensus disorder prediction 105 133 - -
Lele16g0834 191 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 23 77 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0834 Lele-ChrLele16 4667717 4668501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0834 7 191 CCAAT-HAP2 Transcription Factor Family AT3G05690 48.259 8.13e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele16g0834 CBFB_NFYA 3.1e-24 No_clan