Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0833 ATGAACGACTTGCTGAACTCCTCCTTCTCCCGCTCCGCCGAAGACAACCACCACCATGTCATCCAGATGACGGAGCTGACGGACGGCGCCAACCTCGACAAGTTCTTCGAGGAAGTGGATTCCCTCAAGAAGGAGCTCAACGAGCTGGAGCGCCTCAACCAATCCCTCCGAAGCTCCCATGAGCAGAGCAAGACTCTTCACAACGCTAAGGCCGTCAAGGACCTTCGCTCTCGCATGGACTCCGACGTCGCCCTCGCCCTCAAGAAAGCCAAGCTCATCAAGCTCCGCCTCGAGGCACTCGACCGCTCCAACGAAGATAACCGCAAGCTGCCCCGTTGCGGACCCGGCTCGTCTTCCGACCGGACTCGAACTTCCGTGGTCAACGCCTTGAGAAAGAAGCTCAAGGACTCCATGGAGAGCTTCAACAACCTCAGGCAACAAATTTCCACCGAGTACAGAGACACCGTACGACGTAGGTACTACACGGTCACCGGCGAGAATCCCGACGACAAAACCGTCGACCTCCTCGTCTCTACGGGTGAGAGTGAAAGTTTTCTGCAGAAAGCGATTCAGCAGCAAGGGAGAGCGAGCGTGTTGGACACGATCCATGAGATTCAAGAGAGGCACGACGCAGTGAAAGAGATAGAGAGAAATCTGAATGAGCTGCACCAGGTGTTCTTGGACATGGCAGTACTGGTCCAAACCCAGGGGGAGCAGTTGGATGATATAGAGAGCCACGTGGCAAGAGCTGACTCGTACGTGAGTGGCGGGGCGCAGCGGTTGCATGTAGCGAGGAAGCACCAGAAGAACACCCGGAAATGGACTTGCATTGCCATCATACTGCTCCTCATTATTATATTGATTGTAGTTCTACCCATTGTGTTAAGAAAGTGA 894 0.5459 MNDLLNSSFSRSAEDNHHHVIQMTELTDGANLDKFFEEVDSLKKELNELERLNQSLRSSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKLRLEALDRSNEDNRKLPRCGPGSSSDRTRTSVVNALRKKLKDSMESFNNLRQQISTEYRDTVRRRYYTVTGENPDDKTVDLLVSTGESESFLQKAIQQQGRASVLDTIHEIQERHDAVKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHVARADSYVSGGAQRLHVARKHQKNTRKWTCIAIILLLIIILIVVLPIVLRK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0833 297 Coils Coil 127 147 - -
Lele16g0833 297 PANTHER SYNTAXIN 49 284 IPR045242 -
Lele16g0833 297 Gene3D - 29 162 - -
Lele16g0833 297 SMART SynN_4 27 153 IPR006011 GO:0016020
Lele16g0833 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Lele16g0833 297 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele16g0833 297 CDD SynN 32 189 IPR006011 GO:0016020
Lele16g0833 297 SMART tSNARE_6 197 264 IPR000727 -
Lele16g0833 297 FunFam Syntaxin 132 195 295 - -
Lele16g0833 297 SUPERFAMILY t-snare proteins 30 257 IPR010989 GO:0016020|GO:0016192
Lele16g0833 297 Coils Coil 32 66 - -
Lele16g0833 297 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Lele16g0833 297 Gene3D - 190 295 - -
Lele16g0833 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Lele16g0833 297 CDD SNARE_syntaxin1-like 201 261 - -
Lele16g0833 297 Pfam SNARE domain 238 290 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0833 Lele-ChrLele16 4665646 4666729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0833 27 276 SNARE and Associated Proteins AT3G11820 74.800 5.97e-140 395