Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0832 ATGATGTGGCACCTTGGAACTATACGTCATAATTCCTCATCTCTCCCTCCGCAGCCTTTTCTTATTTCCACGTCAGCGTCTAAGTGGTCTCCTTCCCCTACCCACTTGACCTCTGCCCAATCCCTCCCTGCCCTCTTTAAAACTCCCAATCCAACCGCTCCATTTCCGTCTTCTTCTTATCTCTCAAATCGCATCTTATGTCGTCCCGTTAGAATGAATGACCTGTTCTCCGGCTCCTTCTCTCGCCTCAGCCACGAGCAGGCGTCGCCGGACCATCATGTCATCGAGATGGCTCCCACGGCGCCCACCGGCGGTGTCCACCTCGACAAATTCTTCGACAACGTGGAGTCGATCAAGGACGAACTCAAGGAGTTGGATCGCCTCAACCAGAACCTCCAGAGCTCTCACGAGCAGAGCAAGACCCTTCACAATGCGGAGGCCGTCAAGGACCTCCGGTTTCGCATGGACGGCGATGTTGCGCTTGCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGAGCGATCCAACGCGGCCAACCGTAGCTTGCCGGGTTGCGGGCCGGGATCGTCGTCGGACCGGACCCGCACCTCTGTGGTCAACGGTTTGAAAAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCATCGGAATACCGCGAGACTGTACAACGTAGGTATTTCACGGTCACCGGCGAGAACCCCGATGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCCAAGAACAGGGCAGAGGCAGGATTCTGGATACCATCAGTGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTTCTGGTGGAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCGTTTGTGAGGGGCGGAGCGGAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTGTCACGATTCTCCTAGTAATAATCTTTTTTGTAGTTCTCTTCAGTGTTAGACCATGCAAAAATAACGGTGGGGGTGGCGGCAATCATCCAGCTTCACCTCAAACCCCTCCTCCGCCTCCGCCGGCTGCTAGAAGATAA 1200 0.5325 MMWHLGTIRHNSSSLPPQPFLISTSASKWSPSPTHLTSAQSLPALFKTPNPTAPFPSSSYLSNRILCRPVRMNDLFSGSFSRLSHEQASPDHHVIEMAPTAPTGGVHLDKFFDNVESIKDELKELDRLNQNLQSSHEQSKTLHNAEAVKDLRFRMDGDVALALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRGGAEQLQTARKHQKNTRKWTCYAVTILLVIIFFVVLFSVRPCKNNGGGGGNHPASPQTPPPPPPAARR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0832 399 SMART SynN_4 103 229 IPR006011 GO:0016020
Lele16g0832 399 Gene3D - 275 370 - -
Lele16g0832 399 ProSitePatterns Syntaxin / epimorphin family signature. 284 323 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele16g0832 399 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 278 340 IPR000727 -
Lele16g0832 399 SMART tSNARE_6 273 340 IPR000727 -
Lele16g0832 399 PANTHER SYNTAXIN 125 362 IPR045242 -
Lele16g0832 399 CDD SynN 108 265 IPR006011 GO:0016020
Lele16g0832 399 Pfam SNARE domain 314 366 IPR000727 -
Lele16g0832 399 Pfam Syntaxin 110 313 IPR006011 GO:0016020
Lele16g0832 399 SUPERFAMILY t-snare proteins 106 333 IPR010989 GO:0016020|GO:0016192
Lele16g0832 399 Coils Coil 108 138 - -
Lele16g0832 399 MobiDBLite consensus disorder prediction 377 399 - -
Lele16g0832 399 CDD SNARE_syntaxin1-like 277 339 - -
Lele16g0832 399 FunFam Syntaxin 132 271 371 - -
Lele16g0832 399 Gene3D - 106 238 - -
Lele16g0832 399 Coils Coil 203 227 - -
Lele16g0832 399 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 105 235 - -
Lele16g0832 399 MobiDBLite consensus disorder prediction 385 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0832 Lele-ChrLele16 4662243 4663950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0832 99 399 SNARE and Associated Proteins AT3G11820 74.757 7.66e-157 442