Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0829 ATGATTTGCCAAAGCAAGCTTAGCCAAGCTTGCGTTAATTATGAAGTAGGTGAAATATATCATTTGGTAACAAATCAGAGGCATCCAATAACATATTTTCTCATGGACTGGCAAACTACATATGAGATAGACTAACACCGACATCTTGTATTCAGAGCTGTGGCACACACCTGGCCAACTTACCCTCATGCATCGTCATGTGCTTATGGCTTGAAAGCAGTAGACACTTCCAAGATTGGCTCTCATATCATATGCAGGCAGAAAGTAGAGGAAGCAACAATCATGGAGAGTAGTGGGTGGAAGCCTAATGTAGAGATATCACCGAACTGTCCCAGATGTGGGTCTTGCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTACTTCTGCAGAGGCTGCAGAAGGTACTGGACCAAAGGAGGATCACTCCGCAATGTTCCCGTCGGCGGCGGCTGCCGTAAGAATAGACGTGGAAGTAAGACCTCCTTCAGACAATCATCAATGGATGCTCCTCCTCCCAAGATTTCACCTCATGGAGATAATTGCAATCCCGCGATAAATCCATATTCATGTAGCTCCTCAGGTGTGCCTGATGCCCCAAATATCGATCTTGCACTCGTTTATGCGAATTTCCTCAATCAAAAGCCAGATTCATCAAGAGGACCAAGCGCAGAAGTTGTGGGTTTGGCAGCGGAAGATGATCAACTTGGAGTGAGTGGGTGTTTGACAGAATCCCAATTGAGTGAGAGTAACCAAATGTACCTGTATGGGTTCAACTCTATGCAGAAAAATCAGGAAGATCATGGAATTGATCAGCGTTGTAGCAGTAGTAATAGTCATGTATATGCTATGAATTTCGAGTTGCCGCCATTGCCAGGTGAAGATCAGGCGGCGATGCATGATATGATGTGGTCCAATTCTGGCTTGCACTCCTCGCAGCTCCCTCTTTTTGGTGCTGATGCTCATGGTGCCGACTTCTTATTGGATAATTGGAGCCACTTCGATTTATCCAGGCCTTGA 1035 0.4541 MICQSKLSQACVNYEVGEIYHLVTNQRHPITYFLMDWQTTYEIDXHRHLVFRAVAHTWPTYPHASSCAYGLKAVDTSKIGSHIICRQKVEEATIMESSGWKPNVEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCRGCRRYWTKGGSLRNVPVGGGCRKNRRGSKTSFRQSSMDAPPPKISPHGDNCNPAINPYSCSSSGVPDAPNIDLALVYANFLNQKPDSSRGPSAEVVGLAAEDDQLGVSGCLTESQLSESNQMYLYGFNSMQKNQEDHGIDQRCSSSNSHVYAMNFELPPLPGEDQAAMHDMMWSNSGLHSSQLPLFGADAHGADFLLDNWSHFDLSRP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0829 344 MobiDBLite consensus disorder prediction 153 186 - -
Lele16g0829 344 Pfam Dof domain, zinc finger 109 162 IPR003851 GO:0003677|GO:0006355
Lele16g0829 344 ProSitePatterns Zinc finger Dof-type signature. 110 146 IPR003851 GO:0003677|GO:0006355
Lele16g0829 344 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 100 131 IPR017896 -
Lele16g0829 344 ProSiteProfiles Zinc finger Dof-type profile. 108 162 IPR003851 GO:0003677|GO:0006355
Lele16g0829 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 101 277 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0829 Lele-ChrLele16 4639105 4641488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0829 86 342 C2C2-Dof Transcription Factor Family AT3G52440 38.571 6.83e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele16g0829 zf-Dof 4.8e-30 No_clan