Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0828 ATGGATCACGAGATCGATGTCCCTCCCTTCTTTATCTGCCCCGTTTCGTTAGAAATCATGAAGGATCCGGTGACTGTGTCCACCGGTATTACCTACGACCGTGAGAGTATTGAGAAATGGCTGTTCTCCGGGAAGAACATAACCTGCCCAGTTACCAAACAACCCCTATCAGACGACGCCGATCTCACCCCCAACCATACCCTTCGCCGATTGATTCAGGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCCACGCCTAAGCCTCCGGTCACCAAAAACCAGATCGCCAAGCTCATCAGAGACGCTTCCCGATCACCTTACTACCTCACTCGATGTCTCCGAGAGCTCAAATCCATCGCTTCCGACAGCGAAACAAATAGACGCTGCATGGAAGGTTCGGGCGCCGTTGAGTTCTTAGCATCTATTATATCCGCAGCCTCACCCCAAGTGGAGCCTAACCAAGACGAGCTGGCCTTAAGTATCCTCCACAGCCTCCAAGTGTCCGAAGCTAGCTTAAAATCTCTCATGGCCTTCAGAAATGGAGAGCTCATAAATTCCTTAGCCACGGTCATGCAGAAGGGAGTCTCTGAGTCACGAGCCTACGCAGTTCTTTTAATGAATTCAATGTTCCAACTTGCTGACTCCACACGCTTGTTCAACATAAGACACGAATTATTCGATGAATTAGTACAGATTCTTAAAGATCAAATCTCCCAGCAGGCCACATATGCGACGCTGCAAACACTGATCCAACTCTGCCCATGGGGAAGGAACAGGTACAAAGCAGTAAAAGTAGGGTGTGTTTGGGCATTGATAGAACTCCTTCTGGATTGTAAGGAGAGGAAGGTGTGTGAGATGATGCTGGTGGTGTTGGATATGCTGTGTGGGTGTGCTGAGGGAAGAGCGGAGCTGTTGAGGCACGGGGCAGGGTTAGCCGTCGTGTCGAAGAAGATTCTGAGGGTTTCGACGTTGACGAACGAGAGGGCGGTGAGAATTTTGCTGTCTGTTTCCAAGTTCTCGGCCACTGCAAGTGTTGTGCAGGAAATGATACGAGTGGGTGTGATGGCGAAGCTATGTTTGGTGATGCAAATGGAGAGTGGAAGCGAGACGAAGGAGAAAGCCAGAGAGATTCTCAAACTGCACGCTCACGCATGCAAGAACTCTTCATGCATGCCCAGCAGTTTGGGTTCCTACTTAGATTGA 1215 0.5004 MDHEIDVPPFFICPVSLEIMKDPVTVSTGITYDRESIEKWLFSGKNITCPVTKQPLSDDADLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVTKNQIAKLIRDASRSPYYLTRCLRELKSIASDSETNRRCMEGSGAVEFLASIISAASPQVEPNQDELALSILHSLQVSEASLKSLMAFRNGELINSLATVMQKGVSESRAYAVLLMNSMFQLADSTRLFNIRHELFDELVQILKDQISQQATYATLQTLIQLCPWGRNRYKAVKVGCVWALIELLLDCKERKVCEMMLVVLDMLCGCAEGRAELLRHGAGLAVVSKKILRVSTLTNERAVRILLSVSKFSATASVVQEMIRVGVMAKLCLVMQMESGSETKEKAREILKLHAHACKNSSCMPSSLGSYLD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0828 404 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Lele16g0828 404 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Lele16g0828 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lele16g0828 404 Gene3D - 95 398 IPR011989 -
Lele16g0828 404 SUPERFAMILY RING/U-box 4 83 - -
Lele16g0828 404 PANTHER WDSAM1 PROTEIN 3 396 IPR045185 GO:0061630
Lele16g0828 404 SUPERFAMILY ARM repeat 101 383 IPR016024 -
Lele16g0828 404 CDD RING-Ubox_PUB 11 54 IPR045210 -
Lele16g0828 404 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Lele16g0828 404 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0828 Lele-ChrLele16 4634168 4635382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0828 1 399 U-box Gene Family AT2G35930 54.591 2.46e-161 458