Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0818 ATGTCGGTTAAAGAGTGTGAGCACCACAAGGGGTGTCGCCGGAAGATATTCCGAAGAATCTTAGCGGGGATCCTTATATTCCTGTTCATAATCCTGTTCATCATTCTGATAATCTGGGCAGTCCTGAGGCCTTCCAAGCCATCCTTCACCCTCCAGGACGTCACCGTATACGCCTTCAACGCCAGCGTCCCCAACTTCTTGACCACAAGTTTCCAAGTCACCCTCTTGTCCCGCAACCCCAACGGAAGGATCGGAGTCTACTACGATCGTCTCGACACCTACGTCGACTATCGCAACCAGCAAGTCACCTATCGCACCGCCATCCCTCCCTCCTATCAGGGTCACAAGGAGGTCGACGTCTGGTCACCCTTCGTCTACGGCAACAACGTGCCCGTCGCTCCTTACAACTTCGAAGGACTGAGTCAGGACCAGTCCAACGGTAACGTTTTGGTGACCATCAAGATCGACGGACGGGTCAGATGGAAAGTGGGGGCCTTCGTCTCCGGGCGTTACCATTTCTACGTGAGGTGCCCCGCTTATATCAGCTGGGGATCCCGGAGCTCTGAATCGGTCGTCGGCGGTAACGCCGTTAAGTATCAATTGGTCCAGCGATGCTCTGTTAGCGTCTAA 630 0.5429 MSVKECEHHKGCRRKIFRRILAGILIFLFIILFIILIIWAVLRPSKPSFTLQDVTVYAFNASVPNFLTTSFQVTLLSRNPNGRIGVYYDRLDTYVDYRNQQVTYRTAIPPSYQGHKEVDVWSPFVYGNNVPVAPYNFEGLSQDQSNGNVLVTIKIDGRVRWKVGAFVSGRYHFYVRCPAYISWGSRSSESVVGGNAVKYQLVQRCSVSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0818 209 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Lele16g0818 209 PANTHER OS05G0367900 PROTEIN 18 206 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0818 Lele-ChrLele16 4575120 4575749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0818 9 177 EF-hand Containing Proteins AT5G21130 21.893 6.29e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0884 06 5494270 5494953 Lele16g0818 16 4575120 4575749 CCT
Lele07g1061 07 6401452 6402135 Lele16g0818 16 4575120 4575749 CCT
Lele08g0872 08 5508661 5509344 Lele16g0818 16 4575120 4575749 CCT
Lele13g1615 13 25101089 25101718 Lele16g0818 16 4575120 4575749 hybridization
Lele14g1549 14 23488929 23489558 Lele16g0818 16 4575120 4575749 hybridization