Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0801 ATGTCTCACCCCAGAAAGAAGCTTCATTTAAGCTCTGTTTCCGTCAAACTAGGCTGCGGCAGCTGCAGTAGACCCAGGCTTTCTCATATTTTCCACCCAAAGCCTAAACCCAATAACCCCTCTTACCATAAACACAAACTTTACAATCTTTCTTCTTCCAGCCACTACGACTCTGCCACCACCACCACCACCACCACCACAACTTTCTCTCCCTACGTCGACTCCTCCCAGTTTTCTGACTCTGATAACTATGGGAATGCGTCGAGGACAGTCGGAGCTTTCGGCAGAGTAGGCGGCGAAGGCGTGGCGGTGGAGAAAGATTCCGACGACCCTTATCTGGATTTTAGGCACTCCATGCTTCAAATGATATTGGAGAATGAGATATACTCCAAGGACGACCTTCGGGAGCTTCTCAATTGTTTTCTTCAGCTCAATTCTCCCTACCAACATGGAGCTATAGTCAGAGCTTTCACTGAGATCTGGAATGGCGTGTTCTCAGTGAAGACCAGTTCCCCCAGATTTCACTTCAGTCGCAAGTCACGTGACTTCTGA 552 0.4855 MSHPRKKLHLSSVSVKLGCGSCSRPRLSHIFHPKPKPNNPSYHKHKLYNLSSSSHYDSATTTTTTTTTFSPYVDSSQFSDSDNYGNASRTVGAFGRVGGEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNSPYQHGAIVRAFTEIWNGVFSVKTSSPRFHFSRKSRDF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0801 183 Pfam Transcriptional repressor, ovate 108 164 IPR006458 -
Lele16g0801 183 ProSiteProfiles OVATE domain profile. 104 163 IPR006458 -
Lele16g0801 183 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 49 166 IPR038933 GO:0045892
Lele16g0801 183 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 102 162 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0801 Lele-ChrLele16 4496317 4496868 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lele16g0801 Ovate 1.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1628 13 25185623 25186171 Lele16g0801 16 4496317 4496868 hybridization
Lele14g1562 14 23560701 23561246 Lele16g0801 16 4496317 4496868 hybridization