Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0786 ATGTCCATAAATCACTACTCATCGGACATTCCTGAGGCCACTCTGTGGTGGACTGAACAATATCACCTTCGTCGTCATCATCAAGGCTTCCTTATGCAGCCCATACAAAACCCCTCTCCTTCGACCTGGCCTTCGTATCTCTACCCTCCTCCGCCGCCAACCCTCTTCAACCTCAACCACGACGAGGATGAAGACGACGACGACGACAGTATTCAACACCAACGGCCCGGTCACGTGGAAAACGATGCGCCCACGTCGCAAGGAGGTTTGGGCGGCGAAGACGAGAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGCGACGTGGGGAAGCTGAACCGGTTGGTGATTCCGAAGCAGCACGCGGAGAAGTACTTCCCGTGGGGGGTGGGTGGGGAGGCGGCCGGAGAGAGCAAGGGCTTGTCGCTGTGTTTCGAGGACGAGGCAGGAAAGTGCTGGAGGTTCCGTTACTCGTACTGGAACAGCAGTCAGAGCTACGTGCTGACCAAAGGCTGGAGTCGTTACGTCAAGGACAAGCGTCTCGATGCTGGCGACGTCGTTTTCTTCCAGCGCCACCGTACCGACTCCAACCGCCTCTTCATCAACTGGAGTCGCCGCCACCAGCCTGGGCCCACCCCGGCCCACGTTAGCAGAGCGGTGCTCGTTCACAATACTCCCACCACCACCACCACCACCACTGAGGCCAACAACAATATCAATATCAATAATAACAATGTTGGTGTGGGTGTGGGGTGGACCAGAAGTTTATATGCTGCACATCCTTATCCTACGCATCATCATCATCAACCCTTGCCATACCAACCTGACTGTCTTCATGCAGGCGTAGGGTTTGAAGCGGAGCAGAACAAAACGACGACGTCGCCGGCGGGAAACAACTCCAGCTCGAGGATACTGAGGCTGTTCGGTGTAAACATGGAATGCCAGCCCGAAGAATCCGGATCCTCCGAACCCGAATACTCAAACCTATCATCGACGTCGTCTCAGGGTACAGCCATCCAACACCACTTCTACGGTCATTACAGTCATCAATCTTCTTCTTATTATTCCGATCAGATGGATGCCAACCAGATGCGAAATCGCCGAGGATAA 1110 0.5468 MSINHYSSDIPEATLWWTEQYHLRRHHQGFLMQPIQNPSPSTWPSYLYPPPPPTLFNLNHDEDEDDDDDSIQHQRPGHVENDAPTSQGGLGGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPWGVGGEAAGESKGLSLCFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWSRRHQPGPTPAHVSRAVLVHNTPTTTTTTTEANNNININNNNVGVGVGWTRSLYAAHPYPTHHHHQPLPYQPDCLHAGVGFEAEQNKTTTSPAGNNSSSRILRLFGVNMECQPEESGSSEPEYSNLSSTSSQGTAIQHHFYGHYSHQSSSYYSDQMDANQMRNRRG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0786 369 Pfam B3 DNA binding domain 100 206 IPR003340 GO:0003677
Lele16g0786 369 ProSiteProfiles B3 DNA-binding domain profile. 100 207 IPR003340 GO:0003677
Lele16g0786 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 79 324 IPR044800 GO:0003700
Lele16g0786 369 MobiDBLite consensus disorder prediction 42 104 - -
Lele16g0786 369 SUPERFAMILY DNA-binding pseudobarrel domain 99 208 IPR015300 -
Lele16g0786 369 MobiDBLite consensus disorder prediction 314 335 - -
Lele16g0786 369 SMART B3_2 100 207 IPR003340 GO:0003677
Lele16g0786 369 Gene3D - 94 212 IPR015300 -
Lele16g0786 369 MobiDBLite consensus disorder prediction 315 335 - -
Lele16g0786 369 CDD B3_DNA 99 197 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0786 Lele-ChrLele16 4415756 4418963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0786 93 318 RAV Transcription Factor Family AT5G06250 47.845 5.35e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele16g0786 B3 1.2e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1575 14 23632698 23634250 Lele16g0786 16 4415756 4418963 hybridization