Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0766 ATGGAGAACTTCAATGAAGGTTTTGAACTGAAGGAGTTTCAGACACTAGAAGGTCACTCCGATAGGGTTTGGAGCTTGGCATGGAACCCTGCTACTGGGCATTCTGGAATTCCATATGTCTTCGCGTCCTGTAGTGGCGACAAAACCGTTCGAATCTGGGAGCAGAATCTCTCCACTGGTCTTTGGGGCTGCAAGGCAGTTTTGGAAGAAACACACACTAGAACAGTTCGATCGTGTGCTTGGTCACCATCTGGAAAACTCTTGGCTACTGCGAGTTTTGATGCTACTACTGCTATCTGGGAACATGTTGGGGGTGATTTTGAGTGTGTCTCTACTCTAGAGGGTCATGAAAATGAAGTGAAGAGCGTATCTTGGAATGCATCTGGATCTCTGCTTGCAACATGTGGCAGAGATAAATCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACACACACAAGATGTGAAGATGGTGCAATGGCATCCAACAATGGATATATTGTTTTCATGTAGCTATGATAATAAAATTAAGGTTTGGGCAGATGGAGGTGACAGTGATGACTGGCAGTGTGTCCAGACTCTAGGAGAACCTAATAATGGTCATACTTCTACTGTGTGGGCTCTCTCCTTCAATACTAGCGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTGAAGTTATGGGAAACAGACAGCATAAGAATGCAATCTGGAAATGTATCTGCTCCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGACAAGGCGTCATTGCCAGTGGAGCAGCTGATGATTGTATACGGTTTTTTGTGGAGAATAATGAAGGCCTGGTTGATGGCGGTCCTCTTTATAAATTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATGTAAATTCAGTGCAATGGAGCCCTGGGGAGAAGCGGCTGCTAGCCTCTGCAAGCGATGATGGGACTATCAAGGTGTGGGAGCTGCTATCACTGTGA 1053 0.4568 MENFNEGFELKEFQTLEGHSDRVWSLAWNPATGHSGIPYVFASCSGDKTVRIWEQNLSTGLWGCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWEHVGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTMDILFSCSYDNKIKVWADGGDSDDWQCVQTLGEPNNGHTSTVWALSFNTSGDKMVTCSDDLTLKLWETDSIRMQSGNVSAPWRHLCTLTGYHDRTIFSVHWSRQGVIASGAADDCIRFFVENNEGLVDGGPLYKLLLKKEKAHDMDVNSVQWSPGEKRLLASASDDGTIKVWELLSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0766 350 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Lele16g0766 350 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Lele16g0766 350 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Lele16g0766 350 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Lele16g0766 350 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 243 IPR001680 GO:0005515
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Lele16g0766 350 CDD WD40 14 346 - -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Lele16g0766 350 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 349 IPR028608 GO:0016226|GO:0097361
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 350 IPR001680 GO:0005515
Lele16g0766 350 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 350 - -
Lele16g0766 350 PANTHER WD40 PROTEIN CIAO1 10 347 IPR028608 GO:0016226|GO:0097361
Lele16g0766 350 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Lele16g0766 350 Pfam WD domain, G-beta repeat 12 53 IPR001680 GO:0005515
Lele16g0766 350 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Lele16g0766 350 Pfam WD domain, G-beta repeat 67 100 IPR001680 GO:0005515
Lele16g0766 350 Pfam WD domain, G-beta repeat 198 239 IPR001680 GO:0005515
Lele16g0766 350 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Lele16g0766 350 Gene3D - 34 349 IPR015943 GO:0005515
Lele16g0766 350 SMART WD40_4 61 101 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 106 145 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 254 293 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 9 54 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 301 346 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 151 190 IPR001680 GO:0005515
Lele16g0766 350 SMART WD40_4 197 240 IPR001680 GO:0005515
Lele16g0766 350 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 8 349 - -
Lele16g0766 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
Lele16g0766 350 SUPERFAMILY WD40 repeat-like 9 345 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0766 Lele-ChrLele16 4307168 4311629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0766 84 350 U-box Gene Family AT2G33340 26.866 4.99e-12 65.1