Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0730 ATGGGAAGCAGTGCGCCGACATATACGGCATTTTTTTTTAGCATTTTTCTCGCATTTTGGTTTTGTGAGACTTTTATTTGGAGCTTCTCCTTGCACAGTGAAAGCGCAACTTGTCATCTCTGCTACTCGCTAGTTTTTGATGAAGAAGCCGAACAGGCTACTGAGCAAGGAGAATCGAAGGATGGAGTTCTGGTATTTTGGATTTCTGATTTTTCTATTAATCTTCGCTATGTTTTGTGGAAGAGTGATGGCGGGATGTTGTTCAAGTCATTGTTGTTTAATGGAAAAGCTGCATGCCAGCATGCAATGATTATGTTGGACGTCAGCAAAAGTTTCATGCTTACTGATCGGTCGCTAGCAGCATCAGACATTGTATTACAGGGGATGGACATGGAGAATTCCCGTAGATCGTTTGATAGGATGAGAAAACTCGGTATGAAAAAACCCCGATTGCACAACGAGCTCGAGTGCGACCCAAATCAAAGTGTTCGACCATTTCCTCAGCGACAGGTGGCTTCTGGGGTTAGGACGTTGGCCTCGGCAAGGCTTAGAACAAACGACAGAGATCCGGGAAGCAATGATTCAGGTCGCGGTCCCCAGCAACTGCTGCACCAGGAGCTTGTGACTCGGTATAAGACTGCGCTTGCTGAGCTGACTTGTAATTCCAAACCAATAATTACGAACTTGACTATAATTGCAGACGAGAATGTCTATGCGGCCAAGGCAATTGTTGCGACTGTCTGCTCTAATATTCTAGAGGTGAACCCAGTTTACACTCTGCGGCTGACTTCTTGTCCATTTCTTTTGGTGCCTAGTGAGCAAAAGCTGCCATCACTCTATTTGCTGGACAGTATAGTTAAGAATATTGGGCGGGAATATATTAAATACTTTGCTGCCAGACTACCTGAGGTATTTTGCAAGGCTTACAGACATGTTGATTCATCCGTCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAAGGAGTATTTCCTCTTCAGACCCTTCAGATGATTGATGAGGAACTGGGTTTTACTCCAGCTGCCAATGGCTTATCTTCTCCATCTCCATCAACTATGCTCAGGAGTGATTCACAATCACAACACCCTCCTCATGGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAACGTCTTCAGCAATCCAGTAGGGTAGGTGAAGTGTTTGGACTGGAAAGTTTTCCTCGAATTTTTGAAAGGTCAATGTTGGATGGGGGACATCTTGTGGCTTTTTTGGCCATAGGTACAGCTAATGATGTGACTGGAACTATTGCAAGCTCAACTGAGGACTCAGATAGGCTGGATAGAGCTATGGTTACTGCCCGACCTTGTGCAGATCCCAGACTTAACATGCGCAACATTAAGCCTGCTAATAGAGATGCATTTAATGGTTCTCTTCCTGAAAAGAGCATCAGTGCGTCCTATGGAGGCAATGGACAAGGTTCCACTCTTTCTAGTAAAGTGGGCTTGGGCATCGGAGAAACTGGTGGTAGGGTCACTGATTTTGGACATGACAAAATATGGTACAAATCAGGCACTGATATTGGAGAGGTTTTGGGCATCGGAGAAACTGGTGGTAGGGTCACTGATTTTGGACATGACAAAATATGGTACAGATCAGGCACTGATATTGGAGAGGTTAAGTCTGGGCAAAGAAATGGTTTAAGTCTCGAGCATGGTATTTCAATTCATGAAGCAACAAAGTCATTAAATTTGGATGCACGTCAGCCATCAACACGAAGCTTAACTGAAATACCTATGAGGAATAGTGTGATATCAATGAGTTGGAGAAATTCTGAGGAAGAGGAATTCATGTGGGACAATATGGACTCTGGAGTGACTGATAACACTGCATCCAGTGTCTCTAGTAACTTGGGTAAAGATCATTGGACTGCTGATGATGAAGGCTTGGATCCACCGCTATCATGGCAATTGCAAGTGCGGCATATATTTGATGAGCTGAATTGTAAGCCAGATCACACGGAAGGCTTTGCATCCACTGGTGGGTTACCATCAATTACGAAGTCCTCTGCTACCATGATGGGTAATCGGCCTTTCCTGTCAAATGCAACAGCAGGAGTGGATGGACGGCATAAATATCACACCGTTCAAGCTGAAACCCCTTTGGATGAACAGTCTCCTTCATTGCAAGAAACAGTGTGCCAGCCTCACCGTGAGCGAAATTTGGCTGAGCAAGAACACCAACAGACTCTTAAAACATCTCATTTTTCTGGAGATCTGCAGGGCAAACATATTCAAGATTCTTCAGCCGCCCGTTCTTCTAATATTCAGGTTGTCAAGTTGCAAAAATCACAACAAAGGGACTTGCATGGTCCAGCACCTTCGTTGACTTATTCTCAACCACGGCATTGTACTGGAGTTTTCCCAAAGCAACACACTGGCTCTTCTCTTCCTGAAGTTTCTTATAAGACAGAGAAGCTAGCCCAGTCAAAAGTTTCTCTAGCCAGTGAAACTTCTGATCAGTCAACATCAAGTGGTTTGTTAGCTGCAGTTATGAAGAGTGGAATTCTTAATAGTTCAACTATGAATAATCTACTTTCTACAAGTTTCCTGGATACAAGGATTCTGCCATTACAATCAGGGAATCAGCCTACACAGCCAGGTGGGCCTCGGGGGAAGGCTGCATCTCCATCTCCATCCGGTACTTCAAAAGACGACTCATCTCATCTGAAAAAAATATCTCAAGGAAAGGTTGAACAACCACCTAGGGCATCTGATCCACCTCCAGCTTCCTCTACTGTGAGTAGTACCTCAGCTCGGACCTCAAATTGCATCAATGCCTCGAGTCCAATTTCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAAAGTCAGAGTCATCAATTAAGGCTCCAACTGATATGCTGAGTCGTTTGGAAGATCAAAGTCACAGCATTAGCACAAGTAGCTCTTCACCAGTTGCTTCTGTCTCTGGTTCTCCAGCTGTCCATGTATCATCAATTGGAGATGAGGTAGACCATGATGTAAACAGCTCTGTTTCCTTATCTCAGTCAACCACCACAGAAATAAGAAATCTTATTGGCTTTGAGTTTAAGCCCGATGTAATCCGACAATTCCATCCATCTGTGGTCAGCGAACTATGGGATGATCTTCCGCATCATTGCAGCATTTGTGGCCTTAGGCTTATCCATCAAGAACAATTTAATGGACACTTGGTATGGCATGCTACAAGGGAAAAGGAACAAAATGGTCTAATTCCGGCATCAAGAAGATGGTATATGCAGCCATGTGAGTGGATTACTGGCAAGGTCGAATATTCAACTGAGTCTGAGTCTACCAATTCTGTAGACGTATACCTTGAGAAAGCAGACAAGACTGAACTGGATACAATGGTTCCATCAGATGAAAATCAATGCTTGTGTGTGGTCTGTGGGGAGCTATTTGAAGACGCTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAGGGGGCTACTTATCTGACCAACTCAGACAATGGTGTTGAGATGGCTAGCAGAAATGTCATTACTGCTAGGGGTCCCATTATCCATGCAAAATGTTTATCAGAGACCTCAATAATCAGTGTCCCACAGATGGTAAGGCTAACAGTCTGA 3645 0.4398 MGSSAPTYTAFFFSIFLAFWFCETFIWSFSLHSESATCHLCYSLVFDEEAEQATEQGESKDGVLVFWISDFSINLRYVLWKSDGGMLFKSLLFNGKAACQHAMIMLDVSKSFMLTDRSLAASDIVLQGMDMENSRRSFDRMRKLGMKKPRLHNELECDPNQSVRPFPQRQVASGVRTLASARLRTNDRDPGSNDSGRGPQQLLHQELVTRYKTALAELTCNSKPIITNLTIIADENVYAAKAIVATVCSNILEVNPVYTLRLTSCPFLLVPSEQKLPSLYLLDSIVKNIGREYIKYFAARLPEVFCKAYRHVDSSVHSSMRHLFGTWKGVFPLQTLQMIDEELGFTPAANGLSSPSPSTMLRSDSQSQHPPHGIHVNPKYLERQRLQQSSRVGEVFGLESFPRIFERSMLDGGHLVAFLAIGTANDVTGTIASSTEDSDRLDRAMVTARPCADPRLNMRNIKPANRDAFNGSLPEKSISASYGGNGQGSTLSSKVGLGIGETGGRVTDFGHDKIWYKSGTDIGEVLGIGETGGRVTDFGHDKIWYRSGTDIGEVKSGQRNGLSLEHGISIHEATKSLNLDARQPSTRSLTEIPMRNSVISMSWRNSEEEEFMWDNMDSGVTDNTASSVSSNLGKDHWTADDEGLDPPLSWQLQVRHIFDELNCKPDHTEGFASTGGLPSITKSSATMMGNRPFLSNATAGVDGRHKYHTVQAETPLDEQSPSLQETVCQPHRERNLAEQEHQQTLKTSHFSGDLQGKHIQDSSAARSSNIQVVKLQKSQQRDLHGPAPSLTYSQPRHCTGVFPKQHTGSSLPEVSYKTEKLAQSKVSLASETSDQSTSSGLLAAVMKSGILNSSTMNNLLSTSFLDTRILPLQSGNQPTQPGGPRGKAASPSPSGTSKDDSSHLKKISQGKVEQPPRASDPPPASSTVSSTSARTSNCINASSPISNLLSSLVAKGLISAKSESSIKAPTDMLSRLEDQSHSISTSSSSPVASVSGSPAVHVSSIGDEVDHDVNSSVSLSQSTTTEIRNLIGFEFKPDVIRQFHPSVVSELWDDLPHHCSICGLRLIHQEQFNGHLVWHATREKEQNGLIPASRRWYMQPCEWITGKVEYSTESESTNSVDVYLEKADKTELDTMVPSDENQCLCVVCGELFEDAYCQERDEWMFKGATYLTNSDNGVEMASRNVITARGPIIHAKCLSETSIISVPQMVRLTV 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0730 1214 SMART 558neu5 206 344 IPR006569 -
Lele16g0730 1214 Pfam CID domain 214 337 IPR006569 -
Lele16g0730 1214 SUPERFAMILY ENTH/VHS domain 205 343 IPR008942 -
Lele16g0730 1214 FunFam polyadenylation and cleavage factor homolog 4 200 344 - -
Lele16g0730 1214 ProSitePatterns Zinc finger C2H2 type domain signature. 1059 1079 IPR013087 -
Lele16g0730 1214 ProSiteProfiles CID domain profile. 203 347 IPR006569 -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 354 372 - -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 973 1000 - -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 736 815 - -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 923 937 - -
Lele16g0730 1214 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 165 1202 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele16g0730 1214 MobiDBLite consensus disorder prediction 354 374 - -
Lele16g0730 1214 Gene3D - 198 344 IPR008942 -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 741 815 - -
Lele16g0730 1214 CDD CID_Pcf11 208 343 - -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 871 937 - -
Lele16g0730 1214 MobiDBLite consensus disorder prediction 182 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0730 Lele-ChrLele16 4119970 4129786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0730 206 412 C2H2 Transcription Factor Family AT4G04885 47.867 3.90e-47 180