Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0729 ATGGAAATGCCTGCCAGAAGATCCAATTACACCCTTCTGAACCAAATTCCTGATGAAGAGTTCGTTGGCGGTGCATCCTTGTCCGCGACTACTACTGCTCCCACTTCTTTATTCGATTCTTCGTCCGGAGACGGCAAGAACAATAAAGTGAAGCTTGACAGAGGATATGATTGGGACTTGGTTGCTGATCATAGGTTCCCTCAGCAGGGAAATCGGATCGGTAATTTATACTCATCGATCGGCCTGCAGAGGCAGTCTAGTGGTAGCAGTTTTGGTGAAAGCTCGCTGTCCGGAGAGTATTATGCTCCAACTCTGTCCACAACAGCTGCAAATGAGATCGATACCTTTGGTTATGTGCATGACGATGGGTTCAAGGTTGGCGGTGGTGCTGGTGTTGGAGGCGAGCTACGGAACAAGTTAGTGGAGACTACGGTAAGGATGGGAGGGTCGTCGTCGGGTAGAAGCTGGGCGCAGCAGACGGAGGAAAGTTATCAATTGCAGCAGTCTTTGGCACTTAGGCTCTCATCCGTGGCAACATGTGCTGATGATCCAAATTTTCTGGATCCATCACCAGATGAATCTGCTTTAAGGTCGTTATCGTCAAATTCGGCAGAGGCAGTGTCACATCGATTCTGGGTCAATGGCTGCCTATCTTACTCTGACAAGATTCCGGACGGCTTCTACCTTGTCCACGGGATGGATCCTTATGTGTGGACTGTGTGTACTGATCTACAGGAAAACGGCCGAATTCCATCAGTTGAATCACTAAAGTCCGTAGATCCCTGCAGTGATTCTTCACTTGAAGTAGTTTTGGTGGATCAACGCAGTGATCCTAGCTTAAAGGAGCTGCAAAACAGAGTACGTAGCATTTCTAGTAGCTGCATAACCACAGCAGAGGTTGTAGATCATCTTGCCAAGTTGGTTTGCAACCGTATGGGGGGTTCAGCTTCAATCGGGGAAAATGACTTTATTTCCATCTGGAGGGCGTGCAGTAATGATCTAAAAGATTGCTTGGGATCTGTTGTTGTTCCTTTAGGTAGTCTATCTGTTGGCATCTGTAGGCATCGTGCTATACTGTTCAAAGTGCTAGCTGACACCATTGATTTGCCCTGTCGAGTTGCTAAAGGCTGTAAGTACTGTTCAAGAGATGATGCTTCCTCTTGTCTTGTCCAATTTGGGCTTGAAAGGGAATATCTGGTTGATTTCATTGGGAAGCCAGGTTTTTTATGGGAGCCTGATTCCTTGCTCAATGGTCCATCCTCCTTCTCATTTTCTTCACCCTTGAGCTTTCCAAGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCATTGGCCAAAGAGTATTTTTCAGATTGTGTGTCTCTTGAGCTTGTCTTTGACAATGATTCTGCAGAACCGTTTGATGGGAAGGGCAGAGAGAGAAATAATGTTAGGTCAAATTCAAATGATAGCAACAAAACTCCTCGCCAGTCTCTGCATTCAGAAGCTTCTGATTTAAGAACTCATGATCAGGGTTCTGAAACATTTGTATCATGCAACGCTCCTCAGATTGTAGACTCTACACCCATGGGCAAGGATCTACCGCCTACTCCTATAACATTGACAAAGTCAAATGCTGATGCTACTCAGGGTAGGAGGTTTGCTGAAGGAAGTCAACTGGTTGCTAGCAAAACCAGTAGAGAGCTTAGCTTTGATATAGAGGATTTCATCATATCTTGGAGTGATCTTGTTTTAAAAGAGAGAATAGGATCAGGTTCTTTTGGAACAGTACATCGAGCTGAGTGGAATGGCTCGGATGTTGCGGTTAAAATTTTGATGGAGCAAGATTTTCATGCTGAAAGATTCAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGCTTGCGGCATCCAAATATTGTTTTATTTATGGGCGCAGTTACTCAGCCTCCAAACTTGTCAATTGTCACAGAATATTTATCTAGGGGTAGCTTATACAGGCTGTTACACAAACCTGGTGCCAGAGAGATGTTGGATGAGAGACGTAGACTGAGTATGGCTTATGATGTGGCAAAGGGAATGAATTATCTTCACAAACGCAATCCTCCCATTGTCCATAGAGATCTGAAGTCTCCAAACCTTCTTGTAGACAAGAAATATACTGTGAAGGTTTGTGATTTCGGCCTTTCACGTATCAAGGCAAATACATTTCTCTCATCCAAGTCTGCTGCTGGGACTCCTGAGTGGATGGCCCCAGAAGTTCTTCGGGATGAGCCATCCAATGAAAAGTCAGATATTTACAGTTTTGGTGTAATCTTGTGGGAGCTGACAACATTGCAACAGCCGTGGAATAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGCAAAAGGCTTGAGATTCCACGTGATTTGAATCCCCAAGTAGCTGCAATAATTGAGGCTTGCTGGGCTAGCGAGCCCTGGAAACGTCCTTCTTTTTCAAGTATAATGGATTCTTTAAGATCATTGATCAAACCTCCTGCACCTCAACCTGCGCGTCCAAACATACCCCTACTTACCTGA 2556 0.4491 MEMPARRSNYTLLNQIPDEEFVGGASLSATTTAPTSLFDSSSGDGKNNKVKLDRGYDWDLVADHRFPQQGNRIGNLYSSIGLQRQSSGSSFGESSLSGEYYAPTLSTTAANEIDTFGYVHDDGFKVGGGAGVGGELRNKLVETTVRMGGSSSGRSWAQQTEESYQLQQSLALRLSSVATCADDPNFLDPSPDESALRSLSSNSAEAVSHRFWVNGCLSYSDKIPDGFYLVHGMDPYVWTVCTDLQENGRIPSVESLKSVDPCSDSSLEVVLVDQRSDPSLKELQNRVRSISSSCITTAEVVDHLAKLVCNRMGGSASIGENDFISIWRACSNDLKDCLGSVVVPLGSLSVGICRHRAILFKVLADTIDLPCRVAKGCKYCSRDDASSCLVQFGLEREYLVDFIGKPGFLWEPDSLLNGPSSFSFSSPLSFPRLKPAEPTIDFRSLAKEYFSDCVSLELVFDNDSAEPFDGKGRERNNVRSNSNDSNKTPRQSLHSEASDLRTHDQGSETFVSCNAPQIVDSTPMGKDLPPTPITLTKSNADATQGRRFAEGSQLVASKTSRELSFDIEDFIISWSDLVLKERIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAREMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRIKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVILWELTTLQQPWNNLNPAQVVAAVGFKGKRLEIPRDLNPQVAAIIEACWASEPWKRPSFSSIMDSLRSLIKPPAPQPARPNIPLLT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0729 851 FunFam Serine/threonine-protein kinase isoform 1 568 655 - -
Lele16g0729 851 PRINTS Tyrosine kinase catalytic domain signature 758 780 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 PRINTS Tyrosine kinase catalytic domain signature 802 824 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 PRINTS Tyrosine kinase catalytic domain signature 739 749 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 PRINTS Tyrosine kinase catalytic domain signature 651 664 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 PRINTS Tyrosine kinase catalytic domain signature 692 710 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 Pfam Ethylene-responsive protein kinase Le-CTR1 204 409 - -
Lele16g0729 851 MobiDBLite consensus disorder prediction 466 480 - -
Lele16g0729 851 Gene3D Transferase(Phosphotransferase) domain 1 656 841 - -
Lele16g0729 851 MobiDBLite consensus disorder prediction 466 505 - -
Lele16g0729 851 Pfam Protein tyrosine and serine/threonine kinase 578 831 IPR001245 GO:0004672|GO:0006468
Lele16g0729 851 CDD STKc_MAP3K-like 583 831 - -
Lele16g0729 851 ProSiteProfiles Protein kinase domain profile. 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0729 851 SMART serkin_6 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0729 851 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 191 834 - -
Lele16g0729 851 FunFam Serine/threonine-protein kinase CTR1 656 841 - -
Lele16g0729 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Lele16g0729 851 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Lele16g0729 851 SUPERFAMILY Protein kinase-like (PK-like) 557 830 IPR011009 -
Lele16g0729 851 Gene3D Phosphorylase Kinase; domain 1 571 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0729 Lele-ChrLele16 4111822 4119496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0729 1 847 MAP Kinase Kinase Kinase AT5G03730 65.593 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele16g0729 PK_Tyr_Ser-Thr 4.9e-71 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g2664 06 34504455 34514063 Lele16g0729 16 4111822 4119496 CCT
Lele07g2701 07 32523170 32534439 Lele16g0729 16 4111822 4119496 CCT
Lele08g2604 08 31776609 31787200 Lele16g0729 16 4111822 4119496 CCT
Lele16g0729 16 4111822 4119496 Lele05g1988 05 14150661 14154725 CCT
Lele16g0729 16 4111822 4119496 Lele06g1822 06 12786972 12790175 CCT
Lele16g0729 16 4111822 4119496 Lele07g2037 07 13622866 13627718 CCT
Lele16g0729 16 4111822 4119496 Lele08g1827 08 12662664 12665889 CCT
Lele14g1634 14 23930618 23937111 Lele16g0729 16 4111822 4119496 hybridization