Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0728 ATGGATCAGCTTTCATCCACGACTATTCTGCCGGATGCGTTTCAAGGGGCCAGAGATGACATTGCCCTGCAAATTGGCCTGATTTGGAGTCAAATCAAGGCCCCATTGATCGTTCCGCTTCTGAGAATAGCAGTGGTTCTGTGCCTGATCATGTCCTTGCTGATGTTCGTGGAGAGGGTGTACATGGGCGTCGTCGTTACGTTGGTGAAACTATTCGGTCGAAAACCAGAGAAGCGTTACAAATGGGAGGCAATGAAGGACGACGTAGAGCTGGGCAACTCAGCTTATCCAATGATGCTCGTTCAAATCCCAATGTACAACGAAAGAGAGGTATATCATCTGTCCATTGGAGCAGCTTGTGGCCTATCTTGGCCTTCAGATAGGATCATAATACAAGTTCTGGACGATTCCACAGACCCGACGATTAAGAGCTTGGTGGAGATGGAGTGCCAGAGATGGGCGAGCAAAGGCATAAGCATAAAGTACGAGATAAGGGACAACAGAAACGGGTACAAAGCGGGGGCTCTGAAAGAGGCAATGAAGCGTAGCTACGTGAAGCAATGCGACTACGTTGCCATTTTAGACGCTGATTTTCAGCCAGAACCTGATTTCCTCTGGCGCGCCGTCCCTTTCCTCCACCACAATCCTCAACTCGCTCTTGTTCAGGCTCGGTGGAAGTTCGTGAATTCGGAAGAGTGTTTGATGACTAGGATGCAGGAGATGTCGTTGGATTATCATTTTACTGTGGAACAAGAAGTGGGCTCTTCCACTTACGCCTTCTTCGGATTCAATGGGACTGCGGGAGTATGGAGAATCTCGGCTCTGAACGAGGCTGGTGGCTGGAAGGATAGGACCACTGTGGAAGACATGGACCTCGCCGTGAGAGCCAGTCTCAAGGGCTGGAAATTCCTCTACTTAGGCAATCTACAGGTTAAAAACGAACTGCCGAGCACTTTCAAGGCGTATCGCTACCAACAGCATCGCTGGTCATGTGGTCCGGCCAATCTTTTCAAGAAAATGGTGTGGGAGATTATGACCAACAAGAAAGTGTCCTTGTGGAAGAAGATACATGTGATATACAGCTTCTTTTTTGTTCGGAAAGTCATAGCCCACATCAACACATTCATATTCTATTGCGTAGTATTGCCTGCAACAGTCCTGGTGCCTGAGGTCGTTGTCCCTAAGTGGGGAGCTGTATATATCCCTTCCATCATCACCCTTCTTAATGCAGTTGGAACCCCCAGGTCATTGCATTTACTAGTCTTTTGGATTCTGTTTGAGAATGTCATGTCTCTGCATCGAACGAAGGCAACAATTATTGGTCTGCTAGAGGCGAGTCGAGTGAATGAATGGATTGTTACTGAAAAACTTGGAGATGCTCTCAAAGCTAAAGCAGGCACTAAAATATCCAAGAAGCCTCGCTTACGGATTGGAGACAGGGTTCACTTGTTAGAGCTTGGGGTTGGATTCTACCTCTTCGTATGTGGCTGCTACGATTTCCTGTTTGGGAAAAACCACTACTTCATATTCCTTTATATACAAGCAGTTGCCTTCTTCATCATGGCGTTTGGATATGTTGGCACCTTTGTTCCCAGCTCGTAG 1602 0.4744 MDQLSSTTILPDAFQGARDDIALQIGLIWSQIKAPLIVPLLRIAVVLCLIMSLLMFVERVYMGVVVTLVKLFGRKPEKRYKWEAMKDDVELGNSAYPMMLVQIPMYNEREVYHLSIGAACGLSWPSDRIIIQVLDDSTDPTIKSLVEMECQRWASKGISIKYEIRDNRNGYKAGALKEAMKRSYVKQCDYVAILDADFQPEPDFLWRAVPFLHHNPQLALVQARWKFVNSEECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGNLQVKNELPSTFKAYRYQQHRWSCGPANLFKKMVWEIMTNKKVSLWKKIHVIYSFFFVRKVIAHINTFIFYCVVLPATVLVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKAKAGTKISKKPRLRIGDRVHLLELGVGFYLFVCGCYDFLFGKNHYFIFLYIQAVAFFIMAFGYVGTFVPSS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0728 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 95 376 IPR029044 -
Lele16g0728 533 CDD CESA_CaSu_A2 97 333 - -
Lele16g0728 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Lele16g0728 533 Pfam Glycosyl transferase family group 2 190 385 IPR001173 -
Lele16g0728 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 313 IPR029044 -
Lele16g0728 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 22 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0728 Lele-ChrLele16 4104326 4108268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0728 1 532 Miscellaneous Gene Families AT5G03760 80.113 0.0 925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2674 05 42644547 42649655 Lele16g0728 16 4104326 4108268 CCT
Lele16g0728 16 4104326 4108268 Lele05g1128 05 7040708 7045832 CCT
Lele13g1692 13 25537003 25557917 Lele16g0728 16 4104326 4108268 hybridization
Lele14g1635 14 23940081 23943629 Lele16g0728 16 4104326 4108268 hybridization