Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0720 ATGCATTCTACCAACGTGCTTTTTGAAGAACCTATTAGGATGATCTCTATTATAGAGCCATCTAAGCCCAGTTTCTTTCCTGCAATGACAAAAATCGTTGGGACACTGGGTCCCAAATCTCGATCTGTAGAGGTTATTTCTAGTTGCCTCAAGGCTGGAATGTCTGTGGCTCGTTTCGACTTCTCTTGGGGTGATCTGGAGTATCATCAGGAGACCTTGGATAATTTGAAGACCGCTGTCAGGAGTACTAAGAAGCTTTGTGCTGTTATGCTGGATACGGTGGGGGCAGAGATGCAAGTTGTTAACAGAAGTGGGACGTCTATATCCCTTCAGGCAGATAGTCATGTTGTTCTTACTCCGGACAAGGGGAGGGAAGCCTCGTCAGAGATATTGCCCATCAATTTTGATGGACTAGCAAAGTCAGTGAAGAAGGGAGATACAATTTTTGTTGGTCAATACTTGTTCACTGGCAGTGAAACTACTTCTGTATGGCTAGAGGTTACTGAAGTCAAAGGACAAGATGTTGTCTGTGTAATAAAAAACTCAGCAACATTGGCTGGTGCATTGTTAACTTTGCATGCCTCTCAGATTCATATTGATTTGCCCACACTTACTGAGAAAGACAAGGAGATCATAAGCACTTGGGGAGTGAAAAATAAAATAGATTTTTTGTCATTGTCATACACCCGGCATGCAGAAGATGTTCGTGAGGCTCGGGAATTCCTTTCCAAATTAGGTGATCTCAGCCAGACTCAAATTTTGGCAAAGATTGAAAATGTTGAGGGATTGAACCATTTTGATGAGATCCTACAAGAAGCAGATGGAATTATCCTTTCCCGTGGGAATCTGGGCATAGATCTTCCACCTGAGAAGGTGTTTTTATTTCAAAAATCTGCTCTTTACAAATGTAATATGGCTGGGAAACCTGCTGTGCTTACACGTGTTGCGGATACCATGACCATCAACTTAAGACCAACTCGTGCAGAAGCCACTGATGTTGCCAATGCTGTTTTGGATGGAAGTGATGCAATTCTTCTTGGTGCTGAGACCCTACGTGGGAGTTACCCTGTTGAGACTATTTCTACTGTTGGCCGAATTTGTGCTGAGGCTGAGAAAGTTTTCAACCAAGACCTCTATTTTAAGAAGACGGTTAAATATGTTGGAGAACCAATGTCCCACTTGGAATCTATTGCATCCTCTGCGGTACGGGCAGCCATTAAGGTGAGGGCTTCTGTTATTATTTGCTTCACTTCAACTGGAAGGGCTGCAAGATTAATAGCAAAGTATAGGCCTCCCATGCCTGTTCTCTCTGTTGTGATCCCTCAAATTAAGACAAATCAGCTAAAGTGGAGCTTTACTGGAGCCTTTGAGGAACAACTGCCAACTGATATGTGGGAAAGCTTATTTCCATCTAATGCAAGACAATCGCTCATAGTGAGATCTCTCTTTCCCTTGCTTGCTGATTCCCGACACCCTGCGGAGTCAACAGGAGCATCGAATGAGTCAATTCTGAAGGTTGCGCTTGATCATGGAAAAAGGTCAGGGTTTATAAAGGCACACGATCGAGTTGTTGTTTGCCAGAAAGTCGGTGACACATCCGTCGTTAAGATCATTGAGCTTGAAGATTAA 1629 0.4334 MHSTNVLFEEPIRMISIIEPSKPSFFPAMTKIVGTLGPKSRSVEVISSCLKAGMSVARFDFSWGDLEYHQETLDNLKTAVRSTKKLCAVMLDTVGAEMQVVNRSGTSISLQADSHVVLTPDKGREASSEILPINFDGLAKSVKKGDTIFVGQYLFTGSETTSVWLEVTEVKGQDVVCVIKNSATLAGALLTLHASQIHIDLPTLTEKDKEIISTWGVKNKIDFLSLSYTRHAEDVREAREFLSKLGDLSQTQILAKIENVEGLNHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKSALYKCNMAGKPAVLTRVADTMTINLRPTRAEATDVANAVLDGSDAILLGAETLRGSYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVRASVIICFTSTGRAARLIAKYRPPMPVLSVVIPQIKTNQLKWSFTGAFEEQLPTDMWESLFPSNARQSLIVRSLFPLLADSRHPAESTGASNESILKVALDHGKRSGFIKAHDRVVVCQKVGDTSVVKIIELED 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0720 542 Gene3D - 30 362 IPR040442 -
Lele16g0720 542 Pfam Pyruvate kinase, alpha/beta domain 395 538 IPR015795 -
Lele16g0720 542 TIGRFAM pyruv_kin: pyruvate kinase 30 442 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 FunFam Pyruvate kinase 96 202 - -
Lele16g0720 542 FunFam Pyruvate kinase 371 528 - -
Lele16g0720 542 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 Gene3D - 363 540 IPR036918 -
Lele16g0720 542 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 7 375 IPR015813 GO:0003824
Lele16g0720 542 PANTHER PYRUVATE KINASE 28 528 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele16g0720 542 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Lele16g0720 542 SUPERFAMILY PK C-terminal domain-like 389 540 IPR036918 -
Lele16g0720 542 SUPERFAMILY PK beta-barrel domain-like 101 186 IPR011037 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0720 Lele-ChrLele16 4054315 4059996 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0989 06 6143269 6144570 Lele16g0720 16 4054315 4059996 CCT
Lele07g1169 07 7063199 7064653 Lele16g0720 16 4054315 4059996 CCT
Lele08g0977 08 6202803 6204113 Lele16g0720 16 4054315 4059996 CCT
Lele05g1988 05 14150661 14154725 Lele16g0720 16 4054315 4059996 CCT
Lele13g1700 13 25593394 25598942 Lele16g0720 16 4054315 4059996 hybridization
Lele14g1642 14 23989706 23995384 Lele16g0720 16 4054315 4059996 hybridization