Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0716 ATGGAATGGAATGCAAGCATCAGACCCTTTGTTCCCAGACCTGAGTCTTCCTTAAGTTTCCTCTACAACTGTAACTGCAGCCCATATCCAGGAATGGAAGTGAAACATGCAGCAGCAGCACAAGGGTTGGTTCCGGACGTGGAGAAAATAAAGTACGGGAACCAGATGGAGAAGAAGAATCGACTAACGAGCGAGCAGCTTGAGTCGCTGGAGAGGAGCTTCCAGGAGGAGATAAAGTTGGACCCTGATAGGAAGATGAAGCTCTCAAGGGAGCTAGGGCTTCAGCCTCGTCAGATTGCTGTATGGTTTCAAAATAGGCGGGCTAGGTGGAAGGCTAAGCAGCTCGAGAACTTGTATGATGCCCTCAAACAAGAATTCGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAGGTTTCTGCTGGTTACACAGAAGTTTCGGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGTGGGTCTAACAAGCAGCCACGGGGAATAACGAGCCATCATCAGCATCAGCAGAATATTGCAGAAGCCAATTGTTCTTTCACAGTAGAGGATTATAGCACTGTTTCACTGCCCTACTGGCCAGCTCTTGTGCCTTATTATCCTTAA 678 0.4779 MEWNASIRPFVPRPESSLSFLYNCNCSPYPGMEVKHAAAAQGLVPDVEKIKYGNQMEKKNRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGSNKQPRGITSHHQHQQNIAEANCSFTVEDYSTVSLPYWPALVPYYP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0716 225 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Lele16g0716 225 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Lele16g0716 225 Coils Coil 105 153 - -
Lele16g0716 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 188 IPR045224 GO:0003700
Lele16g0716 225 SUPERFAMILY Homeodomain-like 49 115 IPR009057 -
Lele16g0716 225 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Lele16g0716 225 FunFam Putative homeobox-leucine zipper protein ATHB-51 55 118 - -
Lele16g0716 225 CDD homeodomain 58 114 IPR001356 GO:0003677
Lele16g0716 225 Gene3D - 51 121 - -
Lele16g0716 225 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
Lele16g0716 225 Coils Coil 53 73 - -
Lele16g0716 225 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Lele16g0716 225 SMART HOX_1 55 117 IPR001356 GO:0003677
Lele16g0716 225 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0716 Lele-ChrLele16 4035952 4037238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0716 1 143 Homeobox Transcription Factor Family AT5G03790 56.173 1.10e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele16g0716 Homeodomain 3.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1703 13 25613259 25614496 Lele16g0716 16 4035952 4037238 hybridization
Lele14g1645 14 24007614 24013764 Lele16g0716 16 4035952 4037238 hybridization