Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0715 ATGGCAGACAAGCACGAAGACGATCGGACTGAGAGCAGCGATTTCACTTCAGAGGACGAAGGCACCGAGGACTATCGACGGGGAGGCTACCACGCTGTTCGAATCGGCGATACCTTCAGGAATGGTCGCTATGTTGTTCAGAGCAAACTCGGTTGGGGGCATTTCTCCACCGTCTGGCTCGCCTGGGACATCCAACTTTCTAGATACGTGGCTCTGAAAGTTCAAAAGAGCGCTCAGCATTACACAGAAGCAGCCATGGACGAGATAACCATTTTACAACAGATTGCAGACGGAGACCCAGAAGATAAAAAGTGCGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGTCCCAATGGACAACATGTTTGTATGGTGTTTGAATACCTTGGGGATAATCTTTTAACGCTTATCAAGTATACTGATTACCTAGGATTGCCAATCAACATGGTTAAAGAGATATGCTTTCACATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATAATACATACTGACTTGAAGCCTGAGAACATCCTCCTCTTATCAATGATTGATCCATCTAAGGATCCTAGAAGGTCTGGTGCTCCCTTAATTCTACCAAATGCTAAAGATAAAACAGCACTTGAATCGGGAATTGGGAAAGAAATGAAAACATCAAATGTGGAATTAATGCGGAATCATAAAAAGATTAAAAGGAAAGCTAAGCAGGCAGCTCAGGGATGTGTAGAGAAGGAAGCTTCTGAGGTTGTTGAGGGGGATCCTGAAACATCTGGTGCTGTAGAATCATCTGTAAATAAGATGCTAAATGCTGGTTCTGCAGGAGAGCAGCCTTCTTCTAGTTCTGCAGGCACCAGTAGGTTGTCTGACGATGACGGGACAAGGGTAAACTGGTCAAAAAACCAAGGTAACAAAAGAGGAAGCCGATCATTAAGGCAGAAGTTGCTGAAATCAGTTGACCTCAAGTGCAAATTAGTTGACTTTGGCAATGCTTGTTGGACATATAAACAGTTTACAAATGATATTCAGACAAGACAATATCGGTGTCCAGAAGTGATCCTTGGATCAAAATATTCTACGTCAGCAGACCTTTGGACCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGGGATGTACTATTTGATCCTCATAGTGGTGACAACTTTGATAGAGATGAGGATCACTTAGCACTAATGATGGAACTTCTGGGCATGATGCCACGTAAGATTGCACTAGGGGGCCGTTACTCACGTGATTTTTTCAATAGATATGGGGATCTGAGGCACATCCGTCGGTTGCGTTTTTGGCCCTTGAGCAAAGTTCTCTTGGAGAAATATGAATTCAATGAGCGAGATGCCAGTGACATGGCCGACTTTTTGGTTCCTATTCTCGACTTTGTTCCTGAGAAACGACCAACGGCCGGTCAGTGCCTTCTGCATCCGTGGATCAATGCCGGTCCCCGCCTTTTGGAGCCATCCGCACCATCTTCTAAGCCCATTTTGGCTGCAGATGGTGCTTTTTCTGACCAAAAGAAAAAGGACAAGGATGACAGAGAGGCTATGGAGGCAGGGATGGGGAATATTGCCATCAATTCAGATTCTAAACCACACACGGATTTATGA 1629 0.4438 MADKHEDDRTESSDFTSEDEGTEDYRRGGYHAVRIGDTFRNGRYVVQSKLGWGHFSTVWLAWDIQLSRYVALKVQKSAQHYTEAAMDEITILQQIADGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYTDYLGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRRSGAPLILPNAKDKTALESGIGKEMKTSNVELMRNHKKIKRKAKQAAQGCVEKEASEVVEGDPETSGAVESSVNKMLNAGSAGEQPSSSSAGTSRLSDDDGTRVNWSKNQGNKRGSRSLRQKLLKSVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWTFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLSKVLLEKYEFNERDASDMADFLVPILDFVPEKRPTAGQCLLHPWINAGPRLLEPSAPSSKPILAADGAFSDQKKKDKDDREAMEAGMGNIAINSDSKPHTDL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0715 542 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele16g0715 542 MobiDBLite consensus disorder prediction 509 524 - -
Lele16g0715 542 Gene3D Transferase(Phosphotransferase) domain 1 98 185 - -
Lele16g0715 542 SUPERFAMILY Protein kinase-like (PK-like) 39 498 IPR011009 -
Lele16g0715 542 MobiDBLite consensus disorder prediction 272 311 - -
Lele16g0715 542 FunFam Serine/threonine-protein kinase SRPK-like protein 315 485 - -
Lele16g0715 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele16g0715 542 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele16g0715 542 MobiDBLite consensus disorder prediction 496 542 - -
Lele16g0715 542 ProSiteProfiles Protein kinase domain profile. 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0715 542 SMART serkin_6 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0715 542 CDD STKc_SRPK 33 485 - -
Lele16g0715 542 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Lele16g0715 542 MobiDBLite consensus disorder prediction 1 23 - -
Lele16g0715 542 Gene3D Transferase(Phosphotransferase) domain 1 307 485 - -
Lele16g0715 542 Pfam Protein kinase domain 321 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0715 542 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g0715 542 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0715 Lele-ChrLele16 4030427 4033479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0715 1 537 EF-hand Containing Proteins AT5G22840 66.236 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele16g0715 Pkinase 8.5e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1704 13 25616624 25619634 Lele16g0715 16 4030427 4033479 hybridization
Lele14g1646 14 24015916 24018991 Lele16g0715 16 4030427 4033479 hybridization