Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0706 ATGAACAGCTGTTCGAAGTGTTCTCGGAGTTTAAGAGCCTCACTTCTGTTCGGATCTGTAGGGACTCCTCCACAGGCAGGTGACTCTGTTATGGCTATCTCAACTTCACCTCTCCTGAAGATGCACGTCAGTACCAAATTTTTTTCGGATCATGAAGTTGCACTATTGTTTAGGATATCTGAACCTATAGATAATGCTGGATTATACGAGTTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGTTACGTCTGAAGATGGGAAGAGCAAAGGGTATGGCTTCGTTCAATTTGAATCAGAGAACTCTGCAAATGTTGCCATTGAAAAGTTGAATGGCTCCACTGTTAGAGATAAACAGATATATGTTGGTAAGTTTATCAAAAAAAGTGAACGCGTCTTGCTTGGTCCTGTTTCCAAGTTCACAAATTTGTTCTTGAAAAATTTGGACCCAGAGATTACAGAGGAGCTTCTGCAGGAAAAGTTCGCCCCTTTTGGCGACATTGTTAATTTGACTATCGCTAAGGACTACAATGGAGTATCAAAGGGTTTTGGCTTTGTGAACTATGGTAATCCAGATGATGCTAAACGGGCAATGGAAACCATGCACGGATCACGACTAGGTTCGAAGATTATATATGTAGCCGGAGCACAAAAGAAGGCTGAGCATGAAAATATCTTGCATCGTCAGTTTGAGGAGAAACGTAAGGAACAGATATTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGACGATGATGTCAATGACGAAGAGCTAAGAGATCATTTTAGTTCATGCGGCACGATAACATCTGCCAAAATTATGCGGGACGACAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGGACAATTTCCATGGATGCGTGTTTCATGGTAAACCGCTACATGTTGCTATTGCTCAGAAGAAGGAAGATAGGGTAGCACGATTAAACGTCCGGCATGCACAGGGAATAGCAGGACTAGCTGGACCTTCAACCGCTGTCATACATGGTGGATATCCTCCTTACTACTACGCAGCTACTGGTGTTGTTTCACAGCTGCCACCTCAAACCGGGCTAGTATATCGACCGCTGGGATTGAGGCCAGGATGGAGGCCCAACGGCTTTGCACCTCCTACCAGACCAGTTCAACAGGCTCTAGTTTCTGTTCCTGCTACTTCTATGAGGCCGCACAGACAAAACAGGAGCAGGATGAATGGGCCGGCAATTTCGCAGGGGAAAGCTTCCTTGGGTACTTTTATGCCAAAAGCACAACAGCCTTCTCAGTCAATGGCCTCATCAAAAGAATCAACTGCTCGGCAGTTCCATGAACTGCAGAGGACTGGGCAGACTAAGTATGTGGCAAGGGGGCGCCAAGCAGCAAAAGCAACTTCTTGGCGAGCACATTTACCCCCTGATCCAGAAACTCAAGCGAAGATTACTGGGATGCTCTTGGAGATGGAAATTGGAGAATTGCTGCTTCTCCTGGAATCTCCAAGGTCTTTCTTTGCCAAGGTGGAAGAAGCTGTGCAGGTGCCTAAGAACTTCGAGACTAAACTGTCGGACCAGGATGCACTTCATCCGAGTTACTTTTCAGCTGAGGTTGCTGTGAACTGA 1659 0.4509 MNSCSKCSRSLRASLLFGSVGTPPQAGDSVMAISTSPLLKMHVSTKFFSDHEVALLFRISEPIDNAGLYELFQNFGKILSSKVVTSEDGKSKGYGFVQFESENSANVAIEKLNGSTVRDKQIYVGKFIKKSERVLLGPVSKFTNLFLKNLDPEITEELLQEKFAPFGDIVNLTIAKDYNGVSKGFGFVNYGNPDDAKRAMETMHGSRLGSKIIYVAGAQKKAEHENILHRQFEEKRKEQILKYKGSNIYVKNIDDDVNDEELRDHFSSCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVDNFHGCVFHGKPLHVAIAQKKEDRVARLNVRHAQGIAGLAGPSTAVIHGGYPPYYYAATGVVSQLPPQTGLVYRPLGLRPGWRPNGFAPPTRPVQQALVSVPATSMRPHRQNRSRMNGPAISQGKASLGTFMPKAQQPSQSMASSKESTARQFHELQRTGQTKYVARGRQAAKATSWRAHLPPDPETQAKITGMLLEMEIGELLLLLESPRSFFAKVEEAVQVPKNFETKLSDQDALHPSYFSAEVAVN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0706 552 Pfam Poly-adenylate binding protein, unique domain 488 526 IPR002004 GO:0003723
Lele16g0706 552 SUPERFAMILY RNA-binding domain, RBD 243 337 IPR035979 GO:0003676
Lele16g0706 552 Gene3D - 57 136 IPR012677 -
Lele16g0706 552 PANTHER RNA BINDING PROTEIN 57 338 - -
Lele16g0706 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 220 IPR000504 GO:0003723
Lele16g0706 552 MobiDBLite consensus disorder prediction 437 462 - -
Lele16g0706 552 CDD RRM4_I_PABPs 245 323 - -
Lele16g0706 552 Gene3D - 223 335 IPR012677 -
Lele16g0706 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 129 IPR000504 GO:0003723
Lele16g0706 552 SUPERFAMILY PABC (PABP) domain 484 539 IPR036053 GO:0003723
Lele16g0706 552 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 439 532 IPR002004 GO:0003723
Lele16g0706 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 323 IPR000504 GO:0003723
Lele16g0706 552 SUPERFAMILY RNA-binding domain, RBD 59 223 IPR035979 GO:0003676
Lele16g0706 552 SMART poly_2 482 530 IPR002004 GO:0003723
Lele16g0706 552 FunFam Polyadenylate-binding protein 229 337 - -
Lele16g0706 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 122 IPR000504 GO:0003723
Lele16g0706 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Lele16g0706 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 317 IPR000504 GO:0003723
Lele16g0706 552 Gene3D - 137 222 IPR012677 -
Lele16g0706 552 MobiDBLite consensus disorder prediction 437 468 - -
Lele16g0706 552 Gene3D - 481 539 - -
Lele16g0706 552 SMART rrm1_1 144 216 IPR000504 GO:0003723
Lele16g0706 552 SMART rrm1_1 53 125 IPR000504 GO:0003723
Lele16g0706 552 SMART rrm1_1 247 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0706 Lele-ChrLele16 3978064 3982239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0706 59 550 Eukaryotic Initiation Factors Gene Family AT2G36660 44.358 5.30e-133 399
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1000 06 6203040 6207861 Lele16g0706 16 3978064 3982239 CCT
Lele07g1180 07 7125059 7129507 Lele16g0706 16 3978064 3982239 CCT
Lele08g0987 08 6263255 6267838 Lele16g0706 16 3978064 3982239 CCT
Lele05g1136 05 7091145 7094812 Lele16g0706 16 3978064 3982239 CCT
Lele13g1713 13 25655055 25659144 Lele16g0706 16 3978064 3982239 hybridization
Lele14g1656 14 24060404 24061157 Lele16g0706 16 3978064 3982239 hybridization