Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0704 ATGGCGGAATCAGCATCTGGTGACTCCCCCAACACCACTCCGCCTCCGGATATCAAACCAGCGGCTACCGAGCATAAAAGTTGGGCCGATGAAGCTGAGGAAGAAGTTCAACAGGAAATGAATGCCGCCTCTAGTTCATCATCAGTGTCATCGCTTAACGTTGACGGATTGGCCATTGATGAGAATAAGAAGACTACTAAGTTCTTGGACGAACCGGAGGACTCCAACATTCACGCGGTTACATCTGGTGATACTCCATACACCTCAGCTAGCACCTTTGAAGATTTGAATCTATCTCCAGAGCTGATAAAAGGATTGTATGTTGAGATGAAATTTCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATCTTAAGTCCTCCTTTTAAGGATCTGATTGCACAGGCACATAATGGTTCAGGCAAGACAACATGTTTTGTGCTTGGTATGCTAAGTCGTGTTGACTCCAAGCTGAAGGCTCCTCAAGCTCTTTGCATTTGTCCAACTAGAGAATTAGCTATTCAGAATACAGAAGTTCTTCGAAAGATGGGGAAATACACTGGTATTATTTCAGAATGCGCCATACCAACAGACAGCAGAGATTCTATTCATATAGCAAAACGGGCACCTATTATGGCACAAGTAGTAATTGGGACTCCTGGAACAATTAAGAAGTGGATGTCATATAAGAAACTGAGTGCGGCCAGATTAAGCATTCTTGTTTTCGATGAGGCTGATCAAATGCTTGCAGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATAATAACTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACCGTCAAGAATTTTGTTTCGAGAACAGTTAAGAAGGATCACAATCAACTTTTTGTAAAGAAAGAAGAGCTCTCTTTAGACTCAGTGAAGCAATACAGGGTGAATTGTCTTGATGAACTCTCTAAGATTGAAGTGATCAAAGATTACATCTTTGAGATAGGAGAGAATGTGGGCCAAACTATCATATTTGTGCGCACAAGAAATAGTGCAAGCATGTTGCACAAAGCACTCGCTGATTTGGGCTACGAGGTCACTTCTATACAAGGCGCTCTTCAGCATGACGAGAGAGATAAGATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTGATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGGTTAATTTGGTTATTAATTATGATCTTCCGGTGAAACATACTGCGGAGTATACTCGTGGGCGTGAACAGGAGCCCGATTATGAGGTGTATTTGCACAGGGTTGGGAGGGCTGGACGTTTTGGGCGCAAGGGGGCCGTATTTAACCTCATATGTGATGAAAGGGAAGCAAATCTCATGGCGAAGATCGAGAGGCACTTTGGCACCCATGTAACTGAGGTCCGAGAAAAAAGCGTTGAAGACTATAAAGGAGCTCTTAGGGAGGCGGGTTTATTGCAATGA 1509 0.4261 MAESASGDSPNTTPPPDIKPAATEHKSWADEAEEEVQQEMNAASSSSSVSSLNVDGLAIDENKKTTKFLDEPEDSNIHAVTSGDTPYTSASTFEDLNLSPELIKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDSKLKAPQALCICPTRELAIQNTEVLRKMGKYTGIISECAIPTDSRDSIHIAKRAPIMAQVVIGTPGTIKKWMSYKKLSAARLSILVFDEADQMLAEDGFKDDSLRIMKDIERVNNNCQVLLFSATFNETVKNFVSRTVKKDHNQLFVKKEELSLDSVKQYRVNCLDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSASMLHKALADLGYEVTSIQGALQHDERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTRGREQEPDYEVYLHRVGRAGRFGRKGAVFNLICDEREANLMAKIERHFGTHVTEVREKSVEDYKGALREAGLLQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0704 502 CDD DEADc_DDX19_DDX25 98 297 - -
Lele16g0704 502 SMART ultradead3 111 317 IPR014001 -
Lele16g0704 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 470 - -
Lele16g0704 502 Pfam Helicase conserved C-terminal domain 327 451 IPR001650 -
Lele16g0704 502 Gene3D - 311 494 IPR027417 -
Lele16g0704 502 MobiDBLite consensus disorder prediction 1 52 - -
Lele16g0704 502 Gene3D - 71 308 IPR027417 -
Lele16g0704 502 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Lele16g0704 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 469 IPR027417 -
Lele16g0704 502 SMART helicmild6 356 451 IPR001650 -
Lele16g0704 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 492 IPR001650 -
Lele16g0704 502 MobiDBLite consensus disorder prediction 38 52 - -
Lele16g0704 502 CDD SF2_C_DEAD 314 460 - -
Lele16g0704 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
Lele16g0704 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0704 Lele-ChrLele16 3964981 3968414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0704 84 483 Eukaryotic Initiation Factors Gene Family AT1G72730 36.165 2.55e-71 231