Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0703 ATGCTTTACATGGTATTCTTATCTTTGAATCAGCTTAAAGAGGAGAGAACTATCCAAACGAAGCAAGAAGAGAACCGATTCACAAGAGTATTTGAGATAAATTGTGGCTCTTCTCTTTCTGTCTCCCAGGATTAGGGATCACCCGACAGACAATCTCAACCACGCCCTCAGGAAGGCTGTACTTCTACTCAGTCCTGGTACCCTCCATCCGTAGTGACCTCACCCTGTTCTTCTAGGCCTACAATACCAAGTGGCACTTCTTCAAGTAGCTATGGTTCACAGAGACCTACAGAAAGATTGCAGTCTCCATCACATGTTTCTCCCACCGAAGCTGCAGTAGTTATTGCTCATCTGAAGGACAACAGTGCTGATGAGCTACGGAAGCTTTTATCTGACAAAGATGCATACCAGCAATTTTTACTTTCGCTTGATCAGGTCAAAATTCAAAACAATTTGAAAGACGAACTTTGCGAGGAGACTACACAGCTTGCAGGTGAGTGTGTACATTCTTTGACCAGATGTAGAATAATTCGGACAACTGAGTTAGCCACTGCTCAAGAGAATCTAAATGAAATTGAGAAGCAGAAAGAACAAGCATTGAAGTTCAGTTCTCCAGCTTCCTTTCTTCAACAGCTCCAAGAGGCTATGAGTAAGACAGAAGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGATAGAGAAATTGAACTTGGATCTTTCTTGCAGAAATACAAGAAGCTTCGTACCAATTACCACAAGAGAGCTCTCGTGCATCTTGCGGCTGGAACATCAAGTGACTTGCGAGCTTTAAATGCGAGGCTGTTTTCATTTGAAGTTAGTTCTGTACCAAGTTTAGAAGACGAATGGCGTTTTCTGTACTTTACCTTTGTCTATCCTTTGTGA 903 0.4241 MLYMVFLSLNQLKEERTIQTKQEENRFTRVFEINCGSSLSVSQDXGSPDRQSQPRPQEGCTSTQSWYPPSVVTSPCSSRPTIPSGTSSSSYGSQRPTERLQSPSHVSPTEAAVVIAHLKDNSADELRKLLSDKDAYQQFLLSLDQVKIQNNLKDELCEETTQLAGECVHSLTRCRIIRTTELATAQENLNEIEKQKEQALKFSSPASFLQQLQEAMSKTEEESENLHQQLLDREIELGSFLQKYKKLRTNYHKRALVHLAAGTSSDLRALNARLFSFEVSSVPSLEDEWRFLYFTFVYPL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0703 300 Gene3D Helix hairpin bin 191 259 IPR029012 -
Lele16g0703 300 SUPERFAMILY Endosomal sorting complex assembly domain 208 254 IPR037202 -
Lele16g0703 300 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 51 264 - -
Lele16g0703 300 Coils Coil 209 229 - -
Lele16g0703 300 Coils Coil 182 202 - -
Lele16g0703 300 ProSiteProfiles VPS37 C-terminal domain profile. 186 273 IPR009851 -
Lele16g0703 300 Pfam Modifier of rudimentary (Mod(r)) protein 120 255 IPR009851 -
Lele16g0703 300 MobiDBLite consensus disorder prediction 38 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0703 Lele-ChrLele16 3958582 3962781 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1005 06 6233712 6235953 Lele16g0703 16 3958582 3962781 CCT
Lele08g0990 08 6287745 6289918 Lele16g0703 16 3958582 3962781 CCT
Lele13g1716 13 25685071 25689694 Lele16g0703 16 3958582 3962781 hybridization
Lele14g1661 14 24081153 24084174 Lele16g0703 16 3958582 3962781 hybridization