Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0671 ATGGGTCGAGCTCCATGTTGCGACAAGGCAAATGTAAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCCAAGTTAAAGGAGTATATAGAGAAACATGGAACTGGTGGCAACTGGATTGCTCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTAAGATGGCTTAACTATCTCCGGCCCAACATTAAGCACGGCCAGTTCTCTGATGATGAAGACAGAATCATCTGCAGCCTCTTCGCCAGCTTTGGAAGCAGGTGGTCGATAATAGCAGCTCATTTACCTGGGAGGACTGACAACGATATCAAGAATTACTGGAACACCAAGCTTAAGAAGAAAATGATGCTCATGAATAATCCTTCAGTAGTTCAGGGGAATAACAAGCCTAAGCCTCATCATCACCACCAAACTACCCTTTTAACCATTCTTCAAAATTCCACACCAGCTACACCATTATCATTCTCAGACAGCTACCACCAGGATAACGTGTCTTTCACAGGCTCTTCCAATCTTTTGAATGGTAGTAACGCGTGTGCTTCTAACTTCATTTCTCAACCCCAGGATATTACTTTCGTGGGACCCGTTCAGAATCAGACAGTGTCCATGGTTGGTGGTGAGGCTGCTAGTTGCAGCTCTTCTGATGCAAGCTGCAATAACCAGATCACTCATAGTATCAAAGAAACAGAGTTTGTGTACGGAAGAGATGCAACTTTAATCCAACAGGTTGGTGCTGGTGGTGCGCATAATAATTATTATCTCAACAACGGATTCTGGGGAGAGAGTTTATTAGATTATGGGATGGATGAGATTAAACAATTAGCAAGCAATGACAGTTGCAGTAACTTGTTTTTCGATGAGAAGAAAACAGAGGCAAGGGTTTTGTACTACTGA 900 0.4311 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDDEDRIICSLFASFGSRWSIIAAHLPGRTDNDIKNYWNTKLKKKMMLMNNPSVVQGNNKPKPHHHHQTTLLTILQNSTPATPLSFSDSYHQDNVSFTGSSNLLNGSNACASNFISQPQDITFVGPVQNQTVSMVGGEAASCSSSDASCNNQITHSIKETEFVYGRDATLIQQVGAGGAHNNYYLNNGFWGESLLDYGMDEIKQLASNDSCSNLFFDEKKTEARVLYY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0671 299 CDD SANT 71 113 IPR001005 -
Lele16g0671 299 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele16g0671 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele16g0671 299 CDD SANT 16 62 IPR001005 -
Lele16g0671 299 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele16g0671 299 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele16g0671 299 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele16g0671 299 Gene3D - 69 142 - -
Lele16g0671 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele16g0671 299 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele16g0671 299 PANTHER OS09G0431300 PROTEIN 1 279 - -
Lele16g0671 299 SMART sant 67 115 IPR001005 -
Lele16g0671 299 SMART sant 13 64 IPR001005 -
Lele16g0671 299 FunFam Transcription factor RAX3 7 68 - -
Lele16g0671 299 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0671 Lele-ChrLele16 3769914 3771081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0671 1 118 MYB Transcription Factor Family AT5G57620 87.288 1.46e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g0671 Myb_DNA-binding 1.6e-15 CL0123