Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0649 ATGGCTTCGGCTGAATCAAGAACTGTAAGGTTTCAGGATGATGATCTTGAGACTGAGTTGAAACCAAGCAAAGAAAGTCCCATGCCAAAGCCGGCCTTTAAGAAAGAAAGGGGACTTTCGAGGGTCTTCTCTGAGGATTATGATACCACAGAGAAGTTGATATTGGATCCTAGGGGACCAAGAGTGAACAGATGGAACAAAATCTTCCTAGTAGCATGTCTGATTTCTTTATTTGTGGATCCCTTGTTCTTTTACATGCCAGTGGCTAAGAAAGACAAGTGCATTCATTTATCCATTCGCCTCGAAGTGTCCCTCACCATAATTCGCTCCATGGTGGATGCATTTTACATATTTCAGATTTATGTCCGCTTTCAAACTGCTTATGTTGCTCCTTCCTCTCGCGTTTTTGGTAGAGGAGAGCTCATCATTGACCCTTTCAAGATATCATCCAAGTATCTTCAAAGAGACTTCTGGCTTGATGTTGTGGCTGCTCAACCTCTTCCTCAGGTGTTAATATGGCTTGTAATTCCAAATCTCAAGTGTTCACAAATGATTACTTCAAGGCATATACTGCGCCTAGCTACCATTTTCCAGTACCTTTTAAGGTTATATCTCATCTTCCCACTATCATCCCAAATCGTCAAGGCGAAGGGTGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATCTCATGCTGTATATGCTAGCAAGTCATGTTTTAGGATCGTGCTGGTACCTCTTATCAGTTGAAAGGCAGGAGGAGTGCTGGAAAAAAGTTTGTAGTCTTCAACACCCACACTGCCAGTATTATTATCTGGAGTGTGGAAGCGTAGGTGATCCTGGTAGGGTTGCTTGGCTCAGAACAAGCAATGTCTCTGGTCTATGTGATCCCAACAGTAACTTCTTTAAATTTGGCATTTTTGCTGATGCGGTCATTTTGGGAATCACGGGCTCCGAGTTCTTTATCAAATACTTTTACTGTCTTTGGTGGGGACTCAGGAATCTCAGCTCTCTGGGACAGAACCTCTTGACAAGCACTCATGTTGCAGAGATTAGTTTTGCTGTGATCATAGCAATTCTAGGCCTGGTACTTTTCGCCCAGCTTATAGGCAACATGCAGATGTACCTGCAATCAACAACCATGAGGCTGGAAGAATGGAGAATAAGGAGGACAGATACAGAGAGGTGGATGCGCCACAGGCAGCTACCTCATGATCTGAAGCAAAACGTTCGACTATACGAGCAATTCAGATGGGTTGCCACTCGTGGAGTTGACGAGGAAATCATTCTCAGAGACCTTCCTGCTGATCTCAGACGCGACATTAAACGTCACCTCTGCGTCAACCTAGTCCGACAAGTACCACTATTTGATCAGATGGACGAGAGGATGTTGGCCGCGATATGCGAAAGGCTGAAGCCATCTCTGTGCACTCCAGGGACAAGGCTAGTTCGTGAAGGTGACCCTGTGAATGAGATGCTCTTCATAGTTCGAGGTCGTTTGGATTCATTCACGACCAACGGTGGCAGAAGTGGGTTCTTCAATTCCTGCAGAATAGGGTCGGGTGATTTCTGTGGCGAAGAGCTCTTGCCGTGGGTTCTGGACCCTCGTCCTAGTGCGGTTCTTCCTTCATCAACTCGCACAGTGAAAGCCATAACCCACGTCGAAGCTTTTGCACTCATAGCCGAGGACTTGCAGTTCGTGGCAGACCAGTTCCGGAGGCTACACAGTAAACAATTAAGGCACACTTTCAGGTTTTATTCTCAGCAATGGAGGACATGGGCTGCTTGCTTCATACAAGCGGCTTGGTTTAACTATAAGAGGAGAAGAGAGGCAAGTGAGCTCAAGAGGAACCAGAACCACTTGGTTTTGACCTCTGTGCCTGCATGTTATACCGCCATGGAATATTTCTCTGCACCTCTGCAACCGCACTTGGAGTATTCCACTGTTCTTACAAGGTATCCTGTGAGAGGTGGGAGCTTGCGATATGGTTCTGATCTTGACATTCTTGGTTCGTTGAGGAAGCCTGTTGAACCTGACTTCACCATGGAAGATACATGA 2064 0.4593 MASAESRTVRFQDDDLETELKPSKESPMPKPAFKKERGLSRVFSEDYDTTEKLILDPRGPRVNRWNKIFLVACLISLFVDPLFFYMPVAKKDKCIHLSIRLEVSLTIIRSMVDAFYIFQIYVRFQTAYVAPSSRVFGRGELIIDPFKISSKYLQRDFWLDVVAAQPLPQVLIWLVIPNLKCSQMITSRHILRLATIFQYLLRLYLIFPLSSQIVKAKGVMMEKAWAGAAYNLMLYMLASHVLGSCWYLLSVERQEECWKKVCSLQHPHCQYYYLECGSVGDPGRVAWLRTSNVSGLCDPNSNFFKFGIFADAVILGITGSEFFIKYFYCLWWGLRNLSSLGQNLLTSTHVAEISFAVIIAILGLVLFAQLIGNMQMYLQSTTMRLEEWRIRRTDTERWMRHRQLPHDLKQNVRLYEQFRWVATRGVDEEIILRDLPADLRRDIKRHLCVNLVRQVPLFDQMDERMLAAICERLKPSLCTPGTRLVREGDPVNEMLFIVRGRLDSFTTNGGRSGFFNSCRIGSGDFCGEELLPWVLDPRPSAVLPSSTRTVKAITHVEAFALIAEDLQFVADQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWFNYKRRREASELKRNQNHLVLTSVPACYTAMEYFSAPLQPHLEYSTVLTRYPVRGGSLRYGSDLDILGSLRKPVEPDFTMEDT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0649 687 MobiDBLite consensus disorder prediction 8 34 - -
Lele16g0649 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 627 - -
Lele16g0649 687 Gene3D Helix hairpin bin 384 448 - -
Lele16g0649 687 SMART cnmp_10 457 588 IPR000595 -
Lele16g0649 687 FunFam Cyclic nucleotide-gated ion channel 1 455 573 - -
Lele16g0649 687 Gene3D Jelly Rolls 455 575 IPR014710 -
Lele16g0649 687 CDD CAP_ED 457 588 IPR000595 -
Lele16g0649 687 SUPERFAMILY Voltage-gated potassium channels 56 379 - -
Lele16g0649 687 Gene3D - 67 381 - -
Lele16g0649 687 MobiDBLite consensus disorder prediction 1 34 - -
Lele16g0649 687 SUPERFAMILY cAMP-binding domain-like 387 579 IPR018490 -
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 370 379 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 550 558 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 237 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 326 343 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 352 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 420 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 PRINTS EAG/ELK/ERG potassium channel family signature 120 129 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele16g0649 687 ProSiteProfiles cAMP/cGMP binding motif profile. 457 542 IPR000595 -
Lele16g0649 687 Pfam Ion transport protein 65 384 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0649 Lele-ChrLele16 3625196 3627819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0649 28 685 Ion Channels AT2G28260 65.099 0.0 886